PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

1938
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
Bra026856.1-P Flavonoid F3H low borderline
Bra026857.1-P Flavonoid F3H low borderline
Bra027049.1-P Flavonoid F3H medium borderline
Bra027106.1-P Flavonoid F3H medium borderline
Bra027230.1-P Flavonoid F3H low borderline
Bra027231.1-P Flavonoid F3H low borderline
Bra027412.1-P Flavonoid F3H medium borderline
Bra027413.1-P Flavonoid F3H low borderline
Bra027497.1-P Flavonoid F3H medium borderline
Bra028277.1-P Flavonoid F3H medium borderline
Bra028696.1-P Flavonoid F3H medium borderline
Bra028706.1-P Flavonoid F3H medium borderline
Bra028752.1-P Flavonoid F3H medium borderline
Bra029211.1-P Flavonoid F3H medium borderline
Bra029212.1-P Flavonoid F3H medium borderline
Bra029414.1-P Flavonoid F3H medium borderline
Bra029964.1-P Flavonoid F3H low borderline
Bra029996.1-P Flavonoid F3H medium borderline
Bra030566.1-P Flavonoid F3H medium borderline
Bra030567.1-P Flavonoid F3H medium borderline
Bra030971.1-P Flavonoid F3H low borderline
Bra031281.1-P Flavonoid F3H medium borderline
Bra031467.1-P Flavonoid F3H medium borderline
Bra031532.1-P Flavonoid F3H medium borderline
Bra031533.1-P Flavonoid F3H medium borderline
Bra031798.1-P Flavonoid F3H medium borderline
Bra032354.1-P Flavonoid F3H medium borderline
Bra032413.1-P Flavonoid F3H medium borderline
Bra032515.1-P Flavonoid F3H medium borderline
Bra033396.1-P Flavonoid F3H medium borderline
Bra033397.1-P Flavonoid F3H medium borderline
Bra033822.1-P Flavonoid F3H low borderline
Bra034168.1-P Flavonoid F3H medium borderline
Bra034180.1-P Flavonoid F3H low borderline
Bra034181.1-P Flavonoid F3H low borderline
Bra034182.1-P Flavonoid F3H low borderline
Bra034425.1-P Flavonoid F3H low borderline
Bra034504.1-P Flavonoid F3H medium borderline
Bra034720.1-P Flavonoid F3H medium borderline
Bra034861.1-P Flavonoid F3H medium borderline
Bra035038.1-P Flavonoid F3H medium borderline
Bra035046.1-P Flavonoid F3H medium borderline
Bra036058.1-P Flavonoid F3H low borderline
Bra036828.1-P Flavonoid F3H medium borderline
Bra037632.1-P Flavonoid F3H medium borderline
Bra037747.1-P Flavonoid F3H medium borderline
Bra037921.1-P Flavonoid F3H medium borderline
Bra038447.1-P Flavonoid F3H medium borderline
Bra038647.1-P Flavonoid F3H medium borderline
Bra038648.1-P Flavonoid F3H medium borderline