PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

1938
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.86% Alkaloid pathway 22.29% Phenylpropanoid pathway 21.0% Flavonoid pathway 11.92% Rosmarinic acid pathway 7.95% Steroid pathway 5.99%
Family Distribution
BAHD 6.55% C3'H/CYP98A 6.3% C4H 6.18% POD 4.1% CYP76 3.93% IFS 3.87% 4CL 3.52% UGT 3.4%
Other Families 62.15%
More Families (97)
F3H 155 3.19% T3O 154 3.17% UFGT 152 3.13% 7DLGT 148 3.05% DWF4/CYP90B1 138 2.84% NMT 110 2.27% BR6OX2/CYP85A2 108 2.22% F3'H/CYP75B 104 2.14% CODM/T6ODM 99 2.04% STR 80 1.65% SGD 79 1.63% CYP71 75 1.54% TRI/TRII 73 1.5% SMT1/SMT2/SMT3 70 1.44% H6H 68 1.4% CSE 60 1.24% SLS 53 1.09% CAD 49 1.01% PYKS 47 0.97% T16H 44 0.91% CAS 41 0.84% TPS 40 0.82% BBE 39 0.8% COMT 39 0.8% GES 38 0.78% G8O/G8H 38 0.78% IFR 38 0.78% F5H/CYP84A 37 0.76% LAC 36 0.74% RAS 35 0.72% TAT 34 0.7% CYP90D1 34 0.7% ANR 33 0.68% IO 31 0.64% FNS 31 0.64% LAMT 30 0.62% 16OMT 28 0.58% HCT 27 0.56% CCR 26 0.54% GS 24 0.49% PAL 24 0.49% F3'5'H/CYP75A 23 0.47% ANS/LDOX 21 0.43% CYP51G1 20 0.41% 8HGO 19 0.39% CPD/CYP90A1 19 0.39% GGPPS 18 0.37% BR6OX1/CYP85A1 17 0.35% CPR 16 0.33% 7DLH 15 0.31% PMT 14 0.29% NCS 14 0.29% COR 13 0.27% CHS 13 0.27% SQE 13 0.27% FPPS 13 0.27% DFR 11 0.23% CCoAOMT 11 0.23% AACT 11 0.23% MPO 9 0.19% CNMT 9 0.19% SQS/FDFT1 9 0.19% CHI 8 0.16% MVK 8 0.16% HPPR 7 0.14% ROT3/CYP90C1 7 0.14% MVD 7 0.14% CYP719 6 0.12% CYP80F1 6 0.12% TYDC_DDC 6 0.12% DWF7 6 0.12% SMO1/SMO2 6 0.12% ISY 5 0.1% CYP80B1 5 0.1% ADC 5 0.1% XMT_MXMT_DXMT 5 0.1% TDC 4 0.08% DET2 4 0.08% IDI 4 0.08% DXS 4 0.08% HMGR 4 0.08% MCT/IspD 4 0.08% DXR 4 0.08% DWF5 3 0.06% DWF1 3 0.06% PMK 3 0.06% FLS 2 0.04% CPI1 2 0.04% HYD1 2 0.04% HDR/IspH 2 0.04% HMGS 2 0.04% MDS/IspF 2 0.04% 6OMT_4OMT_SOMT 1 0.02% FK 1 0.02% HDS/IspG 1 0.02% GPPS 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
Bra020667.1-P Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
Bra021575.1-P Alkaloid NMT medium pass NMT__00035__sp_Q6K431_TRX1_ORYSJ
Bra021721.1-P Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH
Bra021840.1-P Alkaloid NMT medium pass NMT__00019__sp_O22781_SUVH2_ARATH
Bra022108.1-P Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Bra022109.1-P Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Bra022266.1-P Alkaloid NMT medium borderline NMT__00057__sp_Q9FR44_PEAM1_ARATH
Bra022503.1-P Alkaloid NMT medium borderline NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
Bra022716.1-P Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
Bra023430.1-P Alkaloid NMT medium borderline NMT__00050__sp_Q944H0_PEAM2_ARATH
Bra023722.1-P Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Bra024023.1-P Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
Bra024143.1-P Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
Bra024959.1-P Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Bra024960.1-P Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Bra024961.1-P Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Bra025753.1-P Alkaloid NMT medium borderline NMT__00058__sp_Q9FZN8_TCS1_CAMSI
Bra025811.1-P Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Bra025876.1-P Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
Bra025949.1-P Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bra025950.1-P Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bra026865.1-P Alkaloid NMT medium pass NMT__00068__sp_Q9XI84_RBCMT_ARATH
Bra027316.1-P Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Bra027556.1-P Alkaloid NMT low borderline NMT__00045__sp_Q8VYX1_PEAM1_WHEAT
Bra027983.1-P Alkaloid NMT medium pass NMT__00017__sp_F4K1J4_ATXR7_ARATH
Bra028133.1-P Alkaloid NMT medium pass NMT__00050__sp_Q944H0_PEAM2_ARATH
Bra028618.1-P Alkaloid NMT medium pass NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Bra028776.1-P Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Bra029401.1-P Alkaloid NMT medium pass NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Bra029611.1-P Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
Bra030212.1-P Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Bra030481.1-P Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Bra031313.1-P Alkaloid NMT medium pass NMT__00032__sp_Q5PP37_ATXR2_ARATH
Bra031976.1-P Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
Bra032148.1-P Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
Bra032169.1-P Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
Bra032450.1-P Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH
Bra032592.1-P Alkaloid NMT medium pass NMT__00022__sp_O65312_MEDEA_ARATH
Bra033334.1-P Alkaloid NMT medium pass NMT__00022__sp_O65312_MEDEA_ARATH
Bra033498.1-P Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
Bra033710.1-P Alkaloid NMT medium pass NMT__00055__sp_Q9FNC7_SUVR2_ARATH
Bra033733.1-P Alkaloid NMT medium borderline NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Bra033744.1-P Alkaloid NMT low borderline NMT__00045__sp_Q8VYX1_PEAM1_WHEAT
Bra034765.1-P Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
Bra035822.1-P Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
Bra036004.1-P Alkaloid NMT medium pass NMT__00055__sp_Q9FNC7_SUVR2_ARATH
Bra036027.1-P Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
Bra036300.1-P Alkaloid NMT medium pass NMT__00069__sp_Q9ZSM8_EZA1_ARATH
Bra037086.1-P Alkaloid NMT medium pass NMT__00020__sp_O23372_ATXR3_ARATH
Bra037440.1-P Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH