PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

1938
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.86% Alkaloid pathway 22.29% Phenylpropanoid pathway 21.0% Flavonoid pathway 11.92% Rosmarinic acid pathway 7.95% Steroid pathway 5.99%
Family Distribution
BAHD 6.55% C3'H/CYP98A 6.3% C4H 6.18% POD 4.1% CYP76 3.93% IFS 3.87% 4CL 3.52% UGT 3.4%
Other Families 62.15%
More Families (97)
F3H 155 3.19% T3O 154 3.17% UFGT 152 3.13% 7DLGT 148 3.05% DWF4/CYP90B1 138 2.84% NMT 110 2.27% BR6OX2/CYP85A2 108 2.22% F3'H/CYP75B 104 2.14% CODM/T6ODM 99 2.04% STR 80 1.65% SGD 79 1.63% CYP71 75 1.54% TRI/TRII 73 1.5% SMT1/SMT2/SMT3 70 1.44% H6H 68 1.4% CSE 60 1.24% SLS 53 1.09% CAD 49 1.01% PYKS 47 0.97% T16H 44 0.91% CAS 41 0.84% TPS 40 0.82% BBE 39 0.8% COMT 39 0.8% GES 38 0.78% G8O/G8H 38 0.78% IFR 38 0.78% F5H/CYP84A 37 0.76% LAC 36 0.74% RAS 35 0.72% TAT 34 0.7% CYP90D1 34 0.7% ANR 33 0.68% IO 31 0.64% FNS 31 0.64% LAMT 30 0.62% 16OMT 28 0.58% HCT 27 0.56% CCR 26 0.54% GS 24 0.49% PAL 24 0.49% F3'5'H/CYP75A 23 0.47% ANS/LDOX 21 0.43% CYP51G1 20 0.41% 8HGO 19 0.39% CPD/CYP90A1 19 0.39% GGPPS 18 0.37% BR6OX1/CYP85A1 17 0.35% CPR 16 0.33% 7DLH 15 0.31% PMT 14 0.29% NCS 14 0.29% COR 13 0.27% CHS 13 0.27% SQE 13 0.27% FPPS 13 0.27% DFR 11 0.23% CCoAOMT 11 0.23% AACT 11 0.23% MPO 9 0.19% CNMT 9 0.19% SQS/FDFT1 9 0.19% CHI 8 0.16% MVK 8 0.16% HPPR 7 0.14% ROT3/CYP90C1 7 0.14% MVD 7 0.14% CYP719 6 0.12% CYP80F1 6 0.12% TYDC_DDC 6 0.12% DWF7 6 0.12% SMO1/SMO2 6 0.12% ISY 5 0.1% CYP80B1 5 0.1% ADC 5 0.1% XMT_MXMT_DXMT 5 0.1% TDC 4 0.08% DET2 4 0.08% IDI 4 0.08% DXS 4 0.08% HMGR 4 0.08% MCT/IspD 4 0.08% DXR 4 0.08% DWF5 3 0.06% DWF1 3 0.06% PMK 3 0.06% FLS 2 0.04% CPI1 2 0.04% HYD1 2 0.04% HDR/IspH 2 0.04% HMGS 2 0.04% MDS/IspF 2 0.04% 6OMT_4OMT_SOMT 1 0.02% FK 1 0.02% HDS/IspG 1 0.02% GPPS 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
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Gene Pathway Family Confidence Status Best Target
Bra011993.1-P Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Bra012061.1-P Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bra012492.1-P Phenylpropanoid POD medium pass POD__00024__sp_Q9SCX8_PPA17_ARATH
Bra012649.1-P Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
Bra013053.1-P Phenylpropanoid POD medium pass POD__00011__sp_Q05431_APX1_ARATH
Bra013069.1-P Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Bra013071.1-P Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Bra013072.1-P Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Bra013576.1-P Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
Bra013938.1-P Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bra013943.1-P Phenylpropanoid POD medium pass POD__00002__sp_A5H8G4_PER1_MAIZE
Bra014136.1-P Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Bra014200.1-P Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bra014895.1-P Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bra015402.1-P Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bra015403.1-P Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bra015404.1-P Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bra015668.1-P Phenylpropanoid POD medium pass POD__00015__sp_Q69SV0_APX8_ORYSJ
Bra015695.1-P Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bra016127.1-P Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
Bra016683.1-P Phenylpropanoid POD medium pass POD__00024__sp_Q9SCX8_PPA17_ARATH
Bra016721.1-P Phenylpropanoid POD low borderline POD__00019__sp_Q949Y3_PPA26_ARATH
Bra016930.1-P Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bra017120.1-P Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bra017121.1-P Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bra017206.1-P Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
Bra017514.1-P Phenylpropanoid POD medium pass POD__00013__sp_Q4W1I8_PER1_ZINEL
Bra017686.1-P Phenylpropanoid POD medium pass POD__00011__sp_Q05431_APX1_ARATH
Bra017755.1-P Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Bra017761.1-P Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bra017830.1-P Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bra018006.1-P Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bra018007.1-P Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bra018232.1-P Phenylpropanoid POD medium pass POD__00006__sp_O22850_GPX3_ARATH
Bra018677.1-P Phenylpropanoid POD medium pass POD__00011__sp_Q05431_APX1_ARATH
Bra019131.1-P Phenylpropanoid POD medium pass POD__00002__sp_A5H8G4_PER1_MAIZE
Bra019132.1-P Phenylpropanoid POD medium pass POD__00002__sp_A5H8G4_PER1_MAIZE
Bra019388.1-P Phenylpropanoid POD low borderline POD__00028__sp_Q9ZVD5_AGO4_ARATH
Bra019637.1-P Phenylpropanoid POD medium pass POD__00026__sp_Q9XEX2_PRX2B_ARATH
Bra019699.1-P Phenylpropanoid POD low borderline POD__00019__sp_Q949Y3_PPA26_ARATH
Bra020071.1-P Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bra020072.1-P Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Bra020152.1-P Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Bra020191.1-P Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bra020370.1-P Phenylpropanoid POD medium pass POD__00001__sp_A5H452_PER70_MAIZE
Bra020782.1-P Phenylpropanoid POD medium pass POD__00023__sp_Q9M7T0_PRX2F_ARATH
Bra021274.1-P Phenylpropanoid POD medium pass POD__00024__sp_Q9SCX8_PPA17_ARATH
Bra021456.1-P Phenylpropanoid POD medium pass POD__00006__sp_O22850_GPX3_ARATH
Bra021488.1-P Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Bra022057.1-P Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH