PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

1938
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.86% Alkaloid pathway 22.29% Phenylpropanoid pathway 21.0% Flavonoid pathway 11.92% Rosmarinic acid pathway 7.95% Steroid pathway 5.99%
Family Distribution
BAHD 6.55% C3'H/CYP98A 6.3% C4H 6.18% POD 4.1% CYP76 3.93% IFS 3.87% 4CL 3.52% UGT 3.4%
Other Families 62.15%
More Families (97)
F3H 155 3.19% T3O 154 3.17% UFGT 152 3.13% 7DLGT 148 3.05% DWF4/CYP90B1 138 2.84% NMT 110 2.27% BR6OX2/CYP85A2 108 2.22% F3'H/CYP75B 104 2.14% CODM/T6ODM 99 2.04% STR 80 1.65% SGD 79 1.63% CYP71 75 1.54% TRI/TRII 73 1.5% SMT1/SMT2/SMT3 70 1.44% H6H 68 1.4% CSE 60 1.24% SLS 53 1.09% CAD 49 1.01% PYKS 47 0.97% T16H 44 0.91% CAS 41 0.84% TPS 40 0.82% BBE 39 0.8% COMT 39 0.8% GES 38 0.78% G8O/G8H 38 0.78% IFR 38 0.78% F5H/CYP84A 37 0.76% LAC 36 0.74% RAS 35 0.72% TAT 34 0.7% CYP90D1 34 0.7% ANR 33 0.68% IO 31 0.64% FNS 31 0.64% LAMT 30 0.62% 16OMT 28 0.58% HCT 27 0.56% CCR 26 0.54% GS 24 0.49% PAL 24 0.49% F3'5'H/CYP75A 23 0.47% ANS/LDOX 21 0.43% CYP51G1 20 0.41% 8HGO 19 0.39% CPD/CYP90A1 19 0.39% GGPPS 18 0.37% BR6OX1/CYP85A1 17 0.35% CPR 16 0.33% 7DLH 15 0.31% PMT 14 0.29% NCS 14 0.29% COR 13 0.27% CHS 13 0.27% SQE 13 0.27% FPPS 13 0.27% DFR 11 0.23% CCoAOMT 11 0.23% AACT 11 0.23% MPO 9 0.19% CNMT 9 0.19% SQS/FDFT1 9 0.19% CHI 8 0.16% MVK 8 0.16% HPPR 7 0.14% ROT3/CYP90C1 7 0.14% MVD 7 0.14% CYP719 6 0.12% CYP80F1 6 0.12% TYDC_DDC 6 0.12% DWF7 6 0.12% SMO1/SMO2 6 0.12% ISY 5 0.1% CYP80B1 5 0.1% ADC 5 0.1% XMT_MXMT_DXMT 5 0.1% TDC 4 0.08% DET2 4 0.08% IDI 4 0.08% DXS 4 0.08% HMGR 4 0.08% MCT/IspD 4 0.08% DXR 4 0.08% DWF5 3 0.06% DWF1 3 0.06% PMK 3 0.06% FLS 2 0.04% CPI1 2 0.04% HYD1 2 0.04% HDR/IspH 2 0.04% HMGS 2 0.04% MDS/IspF 2 0.04% 6OMT_4OMT_SOMT 1 0.02% FK 1 0.02% HDS/IspG 1 0.02% GPPS 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
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Gene Pathway Family Confidence Status Best Target
Bra000222.1-P Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
Bra000223.1-P Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
Bra000236.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra000469.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra002234.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra002383.1-P Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
Bra003137.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra003208.1-P Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
Bra003263.1-P Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
Bra003527.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra003820.1-P Alkaloid STR medium pass STR__00002__sp_P68175_STSY_RAUSE
Bra003903.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra004613.1-P Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
Bra004614.1-P Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
Bra005048.1-P Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
Bra005049.1-P Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
Bra005051.1-P Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
Bra005207.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra005208.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra005224.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra007006.1-P Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
Bra007141.1-P Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
Bra007293.1-P Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
Bra007294.1-P Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
Bra007457.1-P Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
Bra007999.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra008127.1-P Alkaloid STR medium pass STR__00002__sp_P68175_STSY_RAUSE
Bra008817.1-P Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
Bra009203.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra013141.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra013916.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra014326.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra014536.1-P Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
Bra014651.1-P Alkaloid STR low borderline STR__00003__sp_Q9M1B4_SSL13_ARATH
Bra014652.1-P Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
Bra014655.1-P Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
Bra014773.1-P Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
Bra014774.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra014775.1-P Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
Bra014776.1-P Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
Bra016095.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra016584.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra016669.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra017193.1-P Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
Bra017198.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra017241.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra018623.1-P Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
Bra018911.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra019051.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra021173.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR