PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

1938
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.86% Alkaloid pathway 22.29% Phenylpropanoid pathway 21.0% Flavonoid pathway 11.92% Rosmarinic acid pathway 7.95% Steroid pathway 5.99%
Family Distribution
BAHD 6.55% C3'H/CYP98A 6.3% C4H 6.18% POD 4.1% CYP76 3.93% IFS 3.87% 4CL 3.52% UGT 3.4%
Other Families 62.15%
More Families (97)
F3H 155 3.19% T3O 154 3.17% UFGT 152 3.13% 7DLGT 148 3.05% DWF4/CYP90B1 138 2.84% NMT 110 2.27% BR6OX2/CYP85A2 108 2.22% F3'H/CYP75B 104 2.14% CODM/T6ODM 99 2.04% STR 80 1.65% SGD 79 1.63% CYP71 75 1.54% TRI/TRII 73 1.5% SMT1/SMT2/SMT3 70 1.44% H6H 68 1.4% CSE 60 1.24% SLS 53 1.09% CAD 49 1.01% PYKS 47 0.97% T16H 44 0.91% CAS 41 0.84% TPS 40 0.82% BBE 39 0.8% COMT 39 0.8% GES 38 0.78% G8O/G8H 38 0.78% IFR 38 0.78% F5H/CYP84A 37 0.76% LAC 36 0.74% RAS 35 0.72% TAT 34 0.7% CYP90D1 34 0.7% ANR 33 0.68% IO 31 0.64% FNS 31 0.64% LAMT 30 0.62% 16OMT 28 0.58% HCT 27 0.56% CCR 26 0.54% GS 24 0.49% PAL 24 0.49% F3'5'H/CYP75A 23 0.47% ANS/LDOX 21 0.43% CYP51G1 20 0.41% 8HGO 19 0.39% CPD/CYP90A1 19 0.39% GGPPS 18 0.37% BR6OX1/CYP85A1 17 0.35% CPR 16 0.33% 7DLH 15 0.31% PMT 14 0.29% NCS 14 0.29% COR 13 0.27% CHS 13 0.27% SQE 13 0.27% FPPS 13 0.27% DFR 11 0.23% CCoAOMT 11 0.23% AACT 11 0.23% MPO 9 0.19% CNMT 9 0.19% SQS/FDFT1 9 0.19% CHI 8 0.16% MVK 8 0.16% HPPR 7 0.14% ROT3/CYP90C1 7 0.14% MVD 7 0.14% CYP719 6 0.12% CYP80F1 6 0.12% TYDC_DDC 6 0.12% DWF7 6 0.12% SMO1/SMO2 6 0.12% ISY 5 0.1% CYP80B1 5 0.1% ADC 5 0.1% XMT_MXMT_DXMT 5 0.1% TDC 4 0.08% DET2 4 0.08% IDI 4 0.08% DXS 4 0.08% HMGR 4 0.08% MCT/IspD 4 0.08% DXR 4 0.08% DWF5 3 0.06% DWF1 3 0.06% PMK 3 0.06% FLS 2 0.04% CPI1 2 0.04% HYD1 2 0.04% HDR/IspH 2 0.04% HMGS 2 0.04% MDS/IspF 2 0.04% 6OMT_4OMT_SOMT 1 0.02% FK 1 0.02% HDS/IspG 1 0.02% GPPS 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
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Gene Pathway Family Confidence Status Best Target
Bra021598.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra022614.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra023065.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra023202.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra025152.1-P Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
Bra025424.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra025944.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra026124.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra026156.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra026157.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra026352.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra026514.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra027171.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra028729.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra028945.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra030437.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra030948.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra031249.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra033441.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra033878.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra034314.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra034344.1-P Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
Bra035353.1-P Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
Bra036798.1-P Alkaloid STR low borderline STR__00003__sp_Q9M1B4_SSL13_ARATH
Bra038121.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra038898.1-P Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
Bra038899.1-P Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
Bra039378.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra039668.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Bra039669.1-P Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR