PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

1938
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
Bra013449.1-P Alkaloid T3O medium borderline
Bra014144.1-P Alkaloid T3O medium pass
Bra014461.1-P Alkaloid T3O medium borderline
Bra014462.1-P Alkaloid T3O medium borderline
Bra014953.1-P Alkaloid T3O medium borderline
Bra015394.1-P Alkaloid T3O medium pass
Bra015934.1-P Alkaloid T3O medium borderline
Bra015998.1-P Alkaloid T3O medium pass
Bra016740.1-P Alkaloid T3O medium borderline
Bra016888.1-P Alkaloid T3O medium borderline
Bra016908.1-P Alkaloid T3O medium borderline
Bra016964.1-P Alkaloid T3O medium borderline
Bra017752.1-P Alkaloid T3O medium borderline
Bra017757.1-P Alkaloid T3O low borderline
Bra017817.1-P Alkaloid T3O medium borderline
Bra017818.1-P Alkaloid T3O medium borderline
Bra018051.1-P Alkaloid T3O low borderline
Bra018069.1-P Alkaloid T3O medium borderline
Bra018471.1-P Alkaloid T3O medium borderline
Bra018856.1-P Alkaloid T3O medium borderline
Bra019551.1-P Alkaloid T3O low borderline
Bra019782.1-P Alkaloid T3O medium pass
Bra019808.1-P Alkaloid T3O medium borderline
Bra019809.1-P Alkaloid T3O medium borderline
Bra020467.1-P Alkaloid T3O medium borderline
Bra020484.1-P Alkaloid T3O medium borderline
Bra020488.1-P Alkaloid T3O medium borderline
Bra020489.1-P Alkaloid T3O medium borderline
Bra020747.1-P Alkaloid T3O medium pass
Bra021505.1-P Alkaloid T3O medium pass
Bra021916.1-P Alkaloid T3O low borderline
Bra021965.1-P Alkaloid T3O medium pass
Bra022407.1-P Alkaloid T3O medium pass
Bra022591.1-P Alkaloid T3O medium pass
Bra022813.1-P Alkaloid T3O medium borderline
Bra023464.1-P Alkaloid T3O medium pass
Bra024001.1-P Alkaloid T3O medium borderline
Bra024465.1-P Alkaloid T3O medium borderline
Bra024479.1-P Alkaloid T3O medium borderline
Bra025083.1-P Alkaloid T3O medium pass
Bra025188.1-P Alkaloid T3O medium borderline
Bra025189.1-P Alkaloid T3O medium borderline
Bra025190.1-P Alkaloid T3O medium borderline
Bra025191.1-P Alkaloid T3O medium borderline
Bra025192.1-P Alkaloid T3O medium borderline
Bra025193.1-P Alkaloid T3O medium borderline
Bra025196.1-P Alkaloid T3O medium borderline
Bra025198.1-P Alkaloid T3O medium borderline
Bra025199.1-P Alkaloid T3O medium borderline
Bra025351.1-P Alkaloid T3O medium borderline