PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

1938
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
Bra025409.1-P Alkaloid T3O medium pass
Bra025427.1-P Alkaloid T3O medium pass
Bra026930.1-P Alkaloid T3O medium borderline
Bra026933.1-P Alkaloid T3O medium borderline
Bra026936.1-P Alkaloid T3O medium borderline
Bra026937.1-P Alkaloid T3O medium borderline
Bra027137.1-P Alkaloid T3O medium borderline
Bra027405.1-P Alkaloid T3O medium pass
Bra027602.1-P Alkaloid T3O medium pass
Bra027902.1-P Alkaloid T3O medium pass
Bra028751.1-P Alkaloid T3O medium pass
Bra028769.1-P Alkaloid T3O low borderline
Bra029224.1-P Alkaloid T3O medium pass
Bra029361.1-P Alkaloid T3O medium pass
Bra029897.1-P Alkaloid T3O medium borderline
Bra029898.1-P Alkaloid T3O medium borderline
Bra032090.1-P Alkaloid T3O medium borderline
Bra032183.1-P Alkaloid T3O medium pass
Bra032184.1-P Alkaloid T3O low borderline
Bra032642.1-P Alkaloid T3O low borderline
Bra032734.1-P Alkaloid T3O medium borderline
Bra032928.1-P Alkaloid T3O medium borderline
Bra033251.1-P Alkaloid T3O low borderline
Bra033509.1-P Alkaloid T3O medium borderline
Bra033594.1-P Alkaloid T3O medium borderline
Bra033626.1-P Alkaloid T3O medium pass
Bra033755.1-P Alkaloid T3O medium borderline
Bra034235.1-P Alkaloid T3O medium borderline
Bra034237.1-P Alkaloid T3O medium borderline
Bra034239.1-P Alkaloid T3O medium borderline
Bra035812.1-P Alkaloid T3O medium borderline
Bra035813.1-P Alkaloid T3O medium borderline
Bra035818.1-P Alkaloid T3O medium borderline
Bra036203.1-P Alkaloid T3O medium pass
Bra036342.1-P Alkaloid T3O medium borderline
Bra036343.1-P Alkaloid T3O medium borderline
Bra036344.1-P Alkaloid T3O medium borderline
Bra036345.1-P Alkaloid T3O medium borderline
Bra036346.1-P Alkaloid T3O medium borderline
Bra036533.1-P Alkaloid T3O medium borderline
Bra036897.1-P Alkaloid T3O medium borderline
Bra037119.1-P Alkaloid T3O medium borderline
Bra037219.1-P Alkaloid T3O medium borderline
Bra037336.1-P Alkaloid T3O low borderline
Bra038413.1-P Alkaloid T3O low borderline
Bra038437.1-P Alkaloid T3O medium borderline
Bra038632.1-P Alkaloid T3O low borderline
Bra039231.1-P Alkaloid T3O medium borderline
Bra039329.1-P Alkaloid T3O medium borderline
Bra039554.1-P Alkaloid T3O medium pass