PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

1938
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.86% Alkaloid pathway 22.29% Phenylpropanoid pathway 21.0% Flavonoid pathway 11.92% Rosmarinic acid pathway 7.95% Steroid pathway 5.99%
Family Distribution
BAHD 6.55% C3'H/CYP98A 6.3% C4H 6.18% POD 4.1% CYP76 3.93% IFS 3.87% 4CL 3.52% UGT 3.4%
Other Families 62.15%
More Families (97)
F3H 155 3.19% T3O 154 3.17% UFGT 152 3.13% 7DLGT 148 3.05% DWF4/CYP90B1 138 2.84% NMT 110 2.27% BR6OX2/CYP85A2 108 2.22% F3'H/CYP75B 104 2.14% CODM/T6ODM 99 2.04% STR 80 1.65% SGD 79 1.63% CYP71 75 1.54% TRI/TRII 73 1.5% SMT1/SMT2/SMT3 70 1.44% H6H 68 1.4% CSE 60 1.24% SLS 53 1.09% CAD 49 1.01% PYKS 47 0.97% T16H 44 0.91% CAS 41 0.84% TPS 40 0.82% BBE 39 0.8% COMT 39 0.8% GES 38 0.78% G8O/G8H 38 0.78% IFR 38 0.78% F5H/CYP84A 37 0.76% LAC 36 0.74% RAS 35 0.72% TAT 34 0.7% CYP90D1 34 0.7% ANR 33 0.68% IO 31 0.64% FNS 31 0.64% LAMT 30 0.62% 16OMT 28 0.58% HCT 27 0.56% CCR 26 0.54% GS 24 0.49% PAL 24 0.49% F3'5'H/CYP75A 23 0.47% ANS/LDOX 21 0.43% CYP51G1 20 0.41% 8HGO 19 0.39% CPD/CYP90A1 19 0.39% GGPPS 18 0.37% BR6OX1/CYP85A1 17 0.35% CPR 16 0.33% 7DLH 15 0.31% PMT 14 0.29% NCS 14 0.29% COR 13 0.27% CHS 13 0.27% SQE 13 0.27% FPPS 13 0.27% DFR 11 0.23% CCoAOMT 11 0.23% AACT 11 0.23% MPO 9 0.19% CNMT 9 0.19% SQS/FDFT1 9 0.19% CHI 8 0.16% MVK 8 0.16% HPPR 7 0.14% ROT3/CYP90C1 7 0.14% MVD 7 0.14% CYP719 6 0.12% CYP80F1 6 0.12% TYDC_DDC 6 0.12% DWF7 6 0.12% SMO1/SMO2 6 0.12% ISY 5 0.1% CYP80B1 5 0.1% ADC 5 0.1% XMT_MXMT_DXMT 5 0.1% TDC 4 0.08% DET2 4 0.08% IDI 4 0.08% DXS 4 0.08% HMGR 4 0.08% MCT/IspD 4 0.08% DXR 4 0.08% DWF5 3 0.06% DWF1 3 0.06% PMK 3 0.06% FLS 2 0.04% CPI1 2 0.04% HYD1 2 0.04% HDR/IspH 2 0.04% HMGS 2 0.04% MDS/IspF 2 0.04% 6OMT_4OMT_SOMT 1 0.02% FK 1 0.02% HDS/IspG 1 0.02% GPPS 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UGT
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Gene Pathway Family Confidence Status Best Target
Bra000329.1-P Terpenoid UGT medium pass UGT__00050__sp_O22822_U74F2_ARATH
Bra000330.1-P Terpenoid UGT medium pass UGT__00050__sp_O22822_U74F2_ARATH
Bra000471.1-P Terpenoid UGT medium pass UGT__00060__sp_O82383_U71D1_ARATH
Bra000542.1-P Terpenoid UGT medium pass UGT__00056__sp_O48715_U76D1_ARATH
Bra000942.1-P Terpenoid UGT medium pass UGT__00103__sp_Q9M156_U72B1_ARATH
Bra001845.1-P Terpenoid UGT medium pass UGT__00096__sp_Q9LSY8_U71B2_ARATH
Bra001846.1-P Terpenoid UGT medium pass UGT__00096__sp_Q9LSY8_U71B2_ARATH
Bra001847.1-P Terpenoid UGT medium pass UGT__00094__sp_Q9LSY4_U71B8_ARATH
Bra002002.1-P Terpenoid UGT medium pass UGT__00075__sp_Q7Y232_U73B4_ARATH
Bra002556.1-P Terpenoid UGT medium pass UGT__00098__sp_Q9LTH2_U76E2_ARATH
Bra003021.1-P Terpenoid UGT medium pass UGT__00035__sp_I1KEV6_FG3H_SOYBN
Bra003220.1-P Terpenoid UGT medium pass UGT__00081__sp_Q9C768_U76B1_ARATH
Bra003824.1-P Terpenoid UGT medium pass UGT__00082__sp_Q9C9B0_U89B1_ARATH
Bra004787.1-P Terpenoid UGT medium pass UGT__00050__sp_O22822_U74F2_ARATH
Bra004788.1-P Terpenoid UGT medium pass UGT__00049__sp_O22820_U74F1_ARATH
Bra005227.1-P Terpenoid UGT medium pass UGT__00105__sp_Q9SK82_U85A1_ARATH
Bra005229.1-P Terpenoid UGT medium pass UGT__00105__sp_Q9SK82_U85A1_ARATH
Bra005241.1-P Terpenoid UGT medium pass UGT__00044__sp_K4GIP0_73C12_BARVU
Bra005242.1-P Terpenoid UGT medium pass UGT__00044__sp_K4GIP0_73C12_BARVU
Bra005243.1-P Terpenoid UGT medium pass UGT__00041__sp_K4GGT4_73C11_BARVU
Bra005244.1-P Terpenoid UGT medium pass UGT__00110__sp_Q9ZQ95_U73C6_ARATH
Bra005245.1-P Terpenoid UGT medium pass UGT__00109__sp_Q9ZQ94_U73C5_ARATH
Bra005246.1-P Terpenoid UGT medium pass UGT__00111__sp_Q9ZQ99_U73C1_ARATH
Bra005641.1-P Terpenoid UGT medium pass UGT__00108__sp_Q9SYK9_U74E2_ARATH
Bra005869.1-P Terpenoid UGT medium pass UGT__00084__sp_Q9FI99_U76C1_ARATH
Bra006271.1-P Terpenoid UGT medium pass UGT__00001__sp_A0A067YB04_UGT1_PUEML
Bra006707.1-P Terpenoid UGT medium pass UGT__00098__sp_Q9LTH2_U76E2_ARATH
Bra006971.1-P Terpenoid UGT medium pass UGT__00109__sp_Q9ZQ94_U73C5_ARATH
Bra006972.1-P Terpenoid UGT medium pass UGT__00109__sp_Q9ZQ94_U73C5_ARATH
Bra006973.1-P Terpenoid UGT medium pass UGT__00019__sp_A0A2R4LMF9_73C25_BARVU
Bra007184.1-P Terpenoid UGT medium pass UGT__00081__sp_Q9C768_U76B1_ARATH
Bra007812.1-P Terpenoid UGT medium pass UGT__00090__sp_Q9LML7_U71C3_ARATH
Bra008354.1-P Terpenoid UGT medium pass UGT__00105__sp_Q9SK82_U85A1_ARATH
Bra008535.1-P Terpenoid UGT medium pass UGT__00103__sp_Q9M156_U72B1_ARATH
Bra008540.1-P Terpenoid UGT medium pass UGT__00103__sp_Q9M156_U72B1_ARATH
Bra008734.1-P Terpenoid UGT medium pass UGT__00109__sp_Q9ZQ94_U73C5_ARATH
Bra008873.1-P Terpenoid UGT medium pass UGT__00078__sp_Q8W491_U73B3_ARATH
Bra009142.1-P Terpenoid UGT medium pass UGT__00085__sp_Q9FIA0_U76C2_ARATH
Bra009143.1-P Terpenoid UGT medium pass UGT__00084__sp_Q9FI99_U76C1_ARATH
Bra009144.1-P Terpenoid UGT medium pass UGT__00085__sp_Q9FIA0_U76C2_ARATH
Bra009145.1-P Terpenoid UGT medium pass UGT__00085__sp_Q9FIA0_U76C2_ARATH
Bra009146.1-P Terpenoid UGT medium pass UGT__00084__sp_Q9FI99_U76C1_ARATH
Bra009147.1-P Terpenoid UGT medium pass UGT__00085__sp_Q9FIA0_U76C2_ARATH
Bra010190.1-P Terpenoid UGT medium pass UGT__00024__sp_B3VI56_U91D2_STERE
Bra011490.1-P Terpenoid UGT medium pass UGT__00078__sp_Q8W491_U73B3_ARATH
Bra011492.1-P Terpenoid UGT medium pass UGT__00078__sp_Q8W491_U73B3_ARATH
Bra011493.1-P Terpenoid UGT medium pass UGT__00077__sp_Q8VZE9_U73B1_ARATH
Bra011495.1-P Terpenoid UGT medium pass UGT__00078__sp_Q8W491_U73B3_ARATH
Bra011496.1-P Terpenoid UGT medium pass UGT__00077__sp_Q8VZE9_U73B1_ARATH
Bra011705.1-P Terpenoid UGT medium pass UGT__00079__sp_Q94A84_U72E1_ARATH