PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

2396
Candidate Protein Records
1938
Pathway-Level Records
4856
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Bra022803.1-P Flavonoid FNS medium borderline
Bra024002.1-P Flavonoid FNS medium borderline
Bra025289.1-P Flavonoid FNS medium borderline
Bra027331.1-P Flavonoid FNS medium borderline
Bra027904.1-P Flavonoid FNS medium borderline
Bra028715.1-P Flavonoid FNS medium borderline
Bra030484.1-P Flavonoid FNS medium borderline
Bra031222.1-P Flavonoid FNS medium borderline
Bra032926.1-P Flavonoid FNS medium borderline
Bra033621.1-P Flavonoid FNS medium borderline
Bra035502.1-P Flavonoid FNS medium borderline
Bra035642.1-P Flavonoid FNS low borderline
Bra037897.1-P Flavonoid FNS low borderline
Bra037999.1-P Flavonoid FNS low borderline
Bra039267.1-P Flavonoid FNS medium borderline
Bra040201.1-P Flavonoid FNS low borderline
Bra000457.1-P Flavonoid IFR low borderline
Bra000697.1-P Flavonoid IFR low borderline
Bra002177.1-P Flavonoid IFR medium pass
Bra005175.1-P Flavonoid IFR low borderline
Bra007007.1-P Flavonoid IFR low borderline
Bra007043.1-P Flavonoid IFR low borderline
Bra008187.1-P Flavonoid IFR high pass
Bra008524.1-P Flavonoid IFR low borderline
Bra009010.1-P Flavonoid IFR low borderline
Bra009604.1-P Flavonoid IFR low borderline
Bra010011.1-P Flavonoid IFR low borderline
Bra010694.1-P Flavonoid IFR high pass
Bra011194.1-P Flavonoid IFR low borderline
Bra011541.1-P Flavonoid IFR high pass
Bra013352.1-P Flavonoid IFR low borderline
Bra013744.1-P Flavonoid IFR low borderline
Bra014390.1-P Flavonoid IFR low borderline
Bra015853.1-P Flavonoid IFR high pass
Bra015854.1-P Flavonoid IFR high pass
Bra016757.1-P Flavonoid IFR low borderline
Bra017165.1-P Flavonoid IFR low borderline
Bra018565.1-P Flavonoid IFR low borderline
Bra019257.1-P Flavonoid IFR low borderline
Bra020809.1-P Flavonoid IFR medium pass
Bra021912.1-P Flavonoid IFR low borderline
Bra022369.1-P Flavonoid IFR low borderline
Bra023237.1-P Flavonoid IFR high pass
Bra023250.1-P Flavonoid IFR low borderline
Bra023545.1-P Flavonoid IFR low borderline
Bra024000.1-P Flavonoid IFR low borderline
Bra025748.1-P Flavonoid IFR high pass
Bra026029.1-P Flavonoid IFR low borderline
Bra028241.1-P Flavonoid IFR low borderline
Bra028572.1-P Flavonoid IFR low borderline