PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

2396
Candidate Protein Records
1938
Pathway-Level Records
4856
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Bra034167.1-P Alkaloid H6H low borderline
Bra034180.1-P Alkaloid H6H low borderline
Bra034182.1-P Alkaloid H6H low borderline
Bra034504.1-P Alkaloid H6H medium borderline
Bra034861.1-P Alkaloid H6H medium borderline
Bra035037.1-P Alkaloid H6H low borderline
Bra036828.1-P Alkaloid H6H medium borderline
Bra037747.1-P Alkaloid H6H medium borderline
Bra038648.1-P Alkaloid H6H medium borderline
Bra039251.1-P Alkaloid H6H medium pass
Bra040443.1-P Alkaloid H6H low borderline
Bra000558.1-P Alkaloid IO medium borderline
Bra004517.1-P Alkaloid IO medium borderline
Bra005811.1-P Alkaloid IO medium borderline
Bra007636.1-P Alkaloid IO medium borderline
Bra009100.1-P Alkaloid IO medium borderline
Bra010598.1-P Alkaloid IO medium borderline
Bra010644.1-P Alkaloid IO medium pass
Bra011759.1-P Alkaloid IO medium borderline
Bra011821.1-P Alkaloid IO medium pass
Bra013634.1-P Alkaloid IO medium borderline
Bra016499.1-P Alkaloid IO medium pass
Bra017819.1-P Alkaloid IO medium borderline
Bra017871.1-P Alkaloid IO medium pass
Bra019366.1-P Alkaloid IO medium borderline
Bra019636.1-P Alkaloid IO medium borderline
Bra020836.1-P Alkaloid IO medium borderline
Bra024133.1-P Alkaloid IO medium borderline
Bra026058.1-P Alkaloid IO medium borderline
Bra027515.1-P Alkaloid IO medium borderline
Bra028714.1-P Alkaloid IO medium borderline
Bra028764.1-P Alkaloid IO high pass
Bra029852.1-P Alkaloid IO medium borderline
Bra030246.1-P Alkaloid IO medium pass
Bra032624.1-P Alkaloid IO medium borderline
Bra033278.1-P Alkaloid IO medium borderline
Bra035320.1-P Alkaloid IO low borderline
Bra039047.1-P Alkaloid IO medium borderline
Bra039188.1-P Alkaloid IO medium borderline
Bra039267.1-P Alkaloid IO medium borderline
Bra039330.1-P Alkaloid IO medium borderline
Bra039495.1-P Alkaloid IO medium borderline
Bra002620.1-P Alkaloid ISY medium pass
Bra010499.1-P Alkaloid ISY medium pass
Bra013777.1-P Alkaloid ISY high pass
Bra019241.1-P Alkaloid ISY high pass
Bra035251.1-P Alkaloid ISY low borderline
Bra001405.1-P Alkaloid LAMT medium borderline
Bra001988.1-P Alkaloid LAMT medium borderline
Bra002919.1-P Alkaloid LAMT medium borderline