PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

2396
Candidate Protein Records
1938
Pathway-Level Records
4856
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Bra039274.1-P Phenylpropanoid LAC medium pass
Bra040902.1-P Phenylpropanoid LAC low borderline
Bra003126.1-P Phenylpropanoid PAL high pass
Bra005221.1-P Phenylpropanoid PAL medium pass
Bra006985.1-P Phenylpropanoid PAL high pass
Bra017210.1-P Phenylpropanoid PAL high pass
Bra028793.1-P Phenylpropanoid PAL medium pass
Bra029831.1-P Phenylpropanoid PAL high pass
Bra030322.1-P Phenylpropanoid PAL high pass
Bra039777.1-P Phenylpropanoid PAL high pass
Bra000058.1-P Phenylpropanoid POD medium pass
Bra000059.1-P Phenylpropanoid POD medium pass
Bra000113.1-P Phenylpropanoid POD medium pass
Bra000228.1-P Phenylpropanoid POD medium pass
Bra000302.1-P Phenylpropanoid POD medium pass
Bra001084.1-P Phenylpropanoid POD medium pass
Bra001415.1-P Phenylpropanoid POD medium pass
Bra001986.1-P Phenylpropanoid POD medium pass
Bra002269.1-P Phenylpropanoid POD medium pass
Bra002270.1-P Phenylpropanoid POD medium pass
Bra002271.1-P Phenylpropanoid POD medium pass
Bra002349.1-P Phenylpropanoid POD medium pass
Bra002360.1-P Phenylpropanoid POD medium pass
Bra002361.1-P Phenylpropanoid POD medium pass
Bra003522.1-P Phenylpropanoid POD medium pass
Bra003918.1-P Phenylpropanoid POD medium pass
Bra003999.1-P Phenylpropanoid POD medium pass
Bra004014.1-P Phenylpropanoid POD medium pass
Bra004138.1-P Phenylpropanoid POD medium pass
Bra004343.1-P Phenylpropanoid POD medium pass
Bra004409.1-P Phenylpropanoid POD medium pass
Bra005346.1-P Phenylpropanoid POD medium pass
Bra005456.1-P Phenylpropanoid POD medium pass
Bra005458.1-P Phenylpropanoid POD medium pass
Bra005850.1-P Phenylpropanoid POD medium pass
Bra005981.1-P Phenylpropanoid POD low borderline
Bra006423.1-P Phenylpropanoid POD medium pass
Bra006769.1-P Phenylpropanoid POD medium pass
Bra006948.1-P Phenylpropanoid POD medium pass
Bra006951.1-P Phenylpropanoid POD medium pass
Bra006963.1-P Phenylpropanoid POD medium pass
Bra007819.1-P Phenylpropanoid POD medium pass
Bra007831.1-P Phenylpropanoid POD medium pass
Bra008291.1-P Phenylpropanoid POD medium pass
Bra008715.1-P Phenylpropanoid POD low borderline
Bra008775.1-P Phenylpropanoid POD medium pass
Bra008895.1-P Phenylpropanoid POD low borderline
Bra008975.1-P Phenylpropanoid POD medium pass
Bra009105.1-P Phenylpropanoid POD medium pass
Bra009181.1-P Phenylpropanoid POD low borderline