PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

2396
Candidate Protein Records
1938
Pathway-Level Records
4856
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Bra038252.1-P Alkaloid NMT low borderline
Bra038488.1-P Alkaloid NMT low borderline
Bra038873.1-P Alkaloid NMT medium borderline
Bra039010.1-P Alkaloid NMT medium pass
Bra039210.1-P Alkaloid NMT medium pass
Bra039562.1-P Alkaloid NMT medium pass
Bra040197.1-P Alkaloid NMT medium pass
Bra040518.1-P Alkaloid NMT low borderline
Bra040689.1-P Alkaloid NMT medium borderline
Bra040838.1-P Alkaloid NMT low borderline
Bra002244.1-P Alkaloid PMT medium pass
Bra003082.1-P Alkaloid PMT medium borderline
Bra012388.1-P Alkaloid PMT medium borderline
Bra012389.1-P Alkaloid PMT medium borderline
Bra016329.1-P Alkaloid PMT medium borderline
Bra018040.1-P Alkaloid PMT low borderline
Bra020045.1-P Alkaloid PMT medium pass
Bra022631.1-P Alkaloid PMT medium borderline
Bra024620.1-P Alkaloid PMT medium borderline
Bra033526.1-P Alkaloid PMT low borderline
Bra036480.1-P Alkaloid PMT low borderline
Bra038414.1-P Alkaloid PMT low borderline
Bra038645.1-P Alkaloid PMT low borderline
Bra039202.1-P Alkaloid PMT low borderline
Bra000559.1-P Alkaloid PYKS high pass
Bra001974.1-P Alkaloid PYKS low borderline
Bra003934.1-P Alkaloid PYKS low borderline
Bra004034.1-P Alkaloid PYKS low borderline
Bra004513.1-P Alkaloid PYKS low borderline
Bra006224.1-P Alkaloid PYKS high pass
Bra007766.1-P Alkaloid PYKS low borderline
Bra007966.1-P Alkaloid PYKS low borderline
Bra008792.1-P Alkaloid PYKS high pass
Bra009413.1-P Alkaloid PYKS low borderline
Bra009445.1-P Alkaloid PYKS low borderline
Bra011513.1-P Alkaloid PYKS low borderline
Bra011566.1-P Alkaloid PYKS high pass
Bra011936.1-P Alkaloid PYKS low borderline
Bra012817.1-P Alkaloid PYKS low borderline
Bra013081.1-P Alkaloid PYKS low borderline
Bra015296.1-P Alkaloid PYKS low borderline
Bra017147.1-P Alkaloid PYKS medium pass
Bra017641.1-P Alkaloid PYKS low borderline
Bra017681.1-P Alkaloid PYKS high pass
Bra018109.1-P Alkaloid PYKS medium pass
Bra018684.1-P Alkaloid PYKS low borderline
Bra020664.1-P Alkaloid PYKS low borderline
Bra020687.1-P Alkaloid PYKS low borderline
Bra020688.1-P Alkaloid PYKS high pass
Bra020799.1-P Alkaloid PYKS low borderline