PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

2396
Candidate Protein Records
1938
Pathway-Level Records
4856
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 30.86% Alkaloid pathway 22.29% Phenylpropanoid pathway 21.0% Flavonoid pathway 11.92% Rosmarinic acid pathway 7.95% Steroid pathway 5.99%
Family Distribution
BAHD 6.55% C3'H/CYP98A 6.3% C4H 6.18% POD 4.1% CYP76 3.93% IFS 3.87% 4CL 3.52% UGT 3.4%
Other Families 62.15%
More Families (97)
F3H 155 3.19% T3O 154 3.17% UFGT 152 3.13% 7DLGT 148 3.05% DWF4/CYP90B1 138 2.84% NMT 110 2.27% BR6OX2/CYP85A2 108 2.22% F3'H/CYP75B 104 2.14% CODM/T6ODM 99 2.04% STR 80 1.65% SGD 79 1.63% CYP71 75 1.54% TRI/TRII 73 1.5% SMT1/SMT2/SMT3 70 1.44% H6H 68 1.4% CSE 60 1.24% SLS 53 1.09% CAD 49 1.01% PYKS 47 0.97% T16H 44 0.91% CAS 41 0.84% TPS 40 0.82% BBE 39 0.8% COMT 39 0.8% GES 38 0.78% G8O/G8H 38 0.78% IFR 38 0.78% F5H/CYP84A 37 0.76% LAC 36 0.74% RAS 35 0.72% TAT 34 0.7% CYP90D1 34 0.7% ANR 33 0.68% IO 31 0.64% FNS 31 0.64% LAMT 30 0.62% 16OMT 28 0.58% HCT 27 0.56% CCR 26 0.54% GS 24 0.49% PAL 24 0.49% F3'5'H/CYP75A 23 0.47% ANS/LDOX 21 0.43% CYP51G1 20 0.41% 8HGO 19 0.39% CPD/CYP90A1 19 0.39% GGPPS 18 0.37% BR6OX1/CYP85A1 17 0.35% CPR 16 0.33% 7DLH 15 0.31% PMT 14 0.29% NCS 14 0.29% COR 13 0.27% CHS 13 0.27% SQE 13 0.27% FPPS 13 0.27% DFR 11 0.23% CCoAOMT 11 0.23% AACT 11 0.23% MPO 9 0.19% CNMT 9 0.19% SQS/FDFT1 9 0.19% CHI 8 0.16% MVK 8 0.16% HPPR 7 0.14% ROT3/CYP90C1 7 0.14% MVD 7 0.14% CYP719 6 0.12% CYP80F1 6 0.12% TYDC_DDC 6 0.12% DWF7 6 0.12% SMO1/SMO2 6 0.12% ISY 5 0.1% CYP80B1 5 0.1% ADC 5 0.1% XMT_MXMT_DXMT 5 0.1% TDC 4 0.08% DET2 4 0.08% IDI 4 0.08% DXS 4 0.08% HMGR 4 0.08% MCT/IspD 4 0.08% DXR 4 0.08% DWF5 3 0.06% DWF1 3 0.06% PMK 3 0.06% FLS 2 0.04% CPI1 2 0.04% HYD1 2 0.04% HDR/IspH 2 0.04% HMGS 2 0.04% MDS/IspF 2 0.04% 6OMT_4OMT_SOMT 1 0.02% FK 1 0.02% HDS/IspG 1 0.02% GPPS 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Bra023441.1-P Alkaloid PYKS high pass
Bra024749.1-P Alkaloid PYKS low borderline
Bra025738.1-P Alkaloid PYKS low borderline
Bra027031.1-P Alkaloid PYKS low borderline
Bra028786.1-P Alkaloid PYKS low borderline
Bra030559.1-P Alkaloid PYKS low borderline
Bra030702.1-P Alkaloid PYKS low borderline
Bra031081.1-P Alkaloid PYKS low borderline
Bra033283.1-P Alkaloid PYKS low borderline
Bra033694.1-P Alkaloid PYKS low borderline
Bra034298.1-P Alkaloid PYKS low borderline
Bra034634.1-P Alkaloid PYKS low borderline
Bra034635.1-P Alkaloid PYKS low borderline
Bra034658.1-P Alkaloid PYKS high pass
Bra035683.1-P Alkaloid PYKS low borderline
Bra035992.1-P Alkaloid PYKS low borderline
Bra036307.1-P Alkaloid PYKS high pass
Bra036405.1-P Alkaloid PYKS low borderline
Bra037304.1-P Alkaloid PYKS low borderline
Bra040245.1-P Alkaloid PYKS low borderline
Bra041147.1-P Alkaloid PYKS low borderline
Bra000461.1-P Alkaloid SGD medium pass
Bra000737.1-P Alkaloid SGD low borderline
Bra001320.1-P Alkaloid SGD medium pass
Bra002978.1-P Alkaloid SGD medium pass
Bra003401.1-P Alkaloid SGD medium pass
Bra004012.1-P Alkaloid SGD medium pass
Bra004433.1-P Alkaloid SGD low borderline
Bra004833.1-P Alkaloid SGD medium pass
Bra004834.1-P Alkaloid SGD medium pass
Bra004835.1-P Alkaloid SGD medium pass
Bra004836.1-P Alkaloid SGD medium pass
Bra004837.1-P Alkaloid SGD low borderline
Bra004838.1-P Alkaloid SGD medium pass
Bra004839.1-P Alkaloid SGD medium pass
Bra004840.1-P Alkaloid SGD medium pass
Bra005550.1-P Alkaloid SGD medium pass
Bra005551.1-P Alkaloid SGD medium pass
Bra006217.1-P Alkaloid SGD medium pass
Bra006755.1-P Alkaloid SGD medium pass
Bra006756.1-P Alkaloid SGD medium pass
Bra007507.1-P Alkaloid SGD medium pass
Bra007508.1-P Alkaloid SGD medium pass
Bra007509.1-P Alkaloid SGD medium pass
Bra007510.1-P Alkaloid SGD medium pass
Bra007698.1-P Alkaloid SGD medium pass
Bra007699.1-P Alkaloid SGD medium pass
Bra008230.1-P Alkaloid SGD medium pass
Bra010805.1-P Alkaloid SGD low borderline
Bra013234.1-P Alkaloid SGD medium pass