PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

2396
Candidate Protein Records
1938
Pathway-Level Records
4856
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
Reset
Protein/Isoform Record Pathway Family Confidence Status
Bra012323.1-P Flavonoid UFGT medium pass
Bra012324.1-P Flavonoid UFGT medium pass
Bra012780.1-P Flavonoid UFGT low borderline
Bra012784.1-P Flavonoid UFGT high pass
Bra012795.1-P Flavonoid UFGT medium pass
Bra012892.1-P Flavonoid UFGT medium pass
Bra012893.1-P Flavonoid UFGT medium pass
Bra013043.1-P Flavonoid UFGT high pass
Bra013105.1-P Flavonoid UFGT medium pass
Bra014225.1-P Flavonoid UFGT high pass
Bra014275.1-P Flavonoid UFGT medium pass
Bra015219.1-P Flavonoid UFGT medium pass
Bra015435.1-P Flavonoid UFGT high pass
Bra015448.1-P Flavonoid UFGT medium pass
Bra015567.1-P Flavonoid UFGT medium pass
Bra015568.1-P Flavonoid UFGT medium pass
Bra016382.1-P Flavonoid UFGT medium pass
Bra016424.1-P Flavonoid UFGT medium pass
Bra017224.1-P Flavonoid UFGT medium pass
Bra017463.1-P Flavonoid UFGT medium pass
Bra017882.1-P Flavonoid UFGT medium pass
Bra018200.1-P Flavonoid UFGT low borderline
Bra018201.1-P Flavonoid UFGT high pass
Bra018202.1-P Flavonoid UFGT high pass
Bra018203.1-P Flavonoid UFGT high pass
Bra018333.1-P Flavonoid UFGT medium pass
Bra018334.1-P Flavonoid UFGT high pass
Bra018363.1-P Flavonoid UFGT medium pass
Bra018364.1-P Flavonoid UFGT medium pass
Bra018440.1-P Flavonoid UFGT medium pass
Bra018792.1-P Flavonoid UFGT medium pass
Bra018793.1-P Flavonoid UFGT medium pass
Bra018901.1-P Flavonoid UFGT medium pass
Bra020310.1-P Flavonoid UFGT high pass
Bra020468.1-P Flavonoid UFGT low borderline
Bra021740.1-P Flavonoid UFGT high pass
Bra021743.1-P Flavonoid UFGT medium pass
Bra021887.1-P Flavonoid UFGT medium pass
Bra022165.1-P Flavonoid UFGT high pass
Bra022688.1-P Flavonoid UFGT high pass
Bra022689.1-P Flavonoid UFGT high pass
Bra022781.1-P Flavonoid UFGT medium pass
Bra022864.1-P Flavonoid UFGT high pass
Bra023079.1-P Flavonoid UFGT medium pass
Bra023080.1-P Flavonoid UFGT medium pass
Bra023081.1-P Flavonoid UFGT medium pass
Bra023594.1-P Flavonoid UFGT high pass
Bra023841.1-P Flavonoid UFGT medium pass
Bra023861.1-P Flavonoid UFGT high pass
Bra023863.1-P Flavonoid UFGT medium pass