PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

2396
Candidate Protein Records
1938
Pathway-Level Records
4856
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Bra021490.1-P Alkaloid T16H medium borderline
Bra021636.1-P Alkaloid T16H medium borderline
Bra021637.1-P Alkaloid T16H medium borderline
Bra021917.1-P Alkaloid T16H medium borderline
Bra022802.1-P Alkaloid T16H medium borderline
Bra022803.1-P Alkaloid T16H medium borderline
Bra025194.1-P Alkaloid T16H medium borderline
Bra026508.1-P Alkaloid T16H medium borderline
Bra026934.1-P Alkaloid T16H medium borderline
Bra028715.1-P Alkaloid T16H medium borderline
Bra030023.1-P Alkaloid T16H medium borderline
Bra030216.1-P Alkaloid T16H medium borderline
Bra030217.1-P Alkaloid T16H medium borderline
Bra032631.1-P Alkaloid T16H medium borderline
Bra033057.1-P Alkaloid T16H medium borderline
Bra033272.1-P Alkaloid T16H medium borderline
Bra034236.1-P Alkaloid T16H medium borderline
Bra034238.1-P Alkaloid T16H medium borderline
Bra035814.1-P Alkaloid T16H medium borderline
Bra036097.1-P Alkaloid T16H medium borderline
Bra038167.1-P Alkaloid T16H medium borderline
Bra038254.1-P Alkaloid T16H medium borderline
Bra039239.1-P Alkaloid T16H medium borderline
Bra039328.1-P Alkaloid T16H medium borderline
Bra039930.1-P Alkaloid T16H medium borderline
Bra040720.1-P Alkaloid T16H medium borderline
Bra040819.1-P Alkaloid T16H medium borderline
Bra000211.1-P Alkaloid T3O medium borderline
Bra000572.1-P Alkaloid T3O medium borderline
Bra000768.1-P Alkaloid T3O medium borderline
Bra000769.1-P Alkaloid T3O medium borderline
Bra001741.1-P Alkaloid T3O medium pass
Bra003019.1-P Alkaloid T3O medium borderline
Bra003129.1-P Alkaloid T3O medium borderline
Bra003247.1-P Alkaloid T3O low borderline
Bra004591.1-P Alkaloid T3O medium borderline
Bra004714.1-P Alkaloid T3O medium pass
Bra004921.1-P Alkaloid T3O medium borderline
Bra005596.1-P Alkaloid T3O medium pass
Bra005843.1-P Alkaloid T3O low borderline
Bra005863.1-P Alkaloid T3O medium pass
Bra006743.1-P Alkaloid T3O low borderline
Bra006829.1-P Alkaloid T3O medium borderline
Bra006987.1-P Alkaloid T3O medium borderline
Bra006988.1-P Alkaloid T3O medium borderline
Bra007259.1-P Alkaloid T3O medium pass
Bra007571.1-P Alkaloid T3O medium borderline
Bra008134.1-P Alkaloid T3O medium borderline
Bra008760.1-P Alkaloid T3O low borderline
Bra009070.1-P Alkaloid T3O medium borderline