PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

2396
Candidate Protein Records
1938
Pathway-Level Records
4856
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Bra009126.1-P Alkaloid T3O medium pass
Bra009148.1-P Alkaloid T3O medium borderline
Bra009149.1-P Alkaloid T3O medium borderline
Bra009312.1-P Alkaloid T3O medium borderline
Bra009817.1-P Alkaloid T3O medium borderline
Bra009820.1-P Alkaloid T3O medium borderline
Bra010214.1-P Alkaloid T3O medium borderline
Bra010596.1-P Alkaloid T3O medium borderline
Bra010597.1-P Alkaloid T3O medium borderline
Bra011276.1-P Alkaloid T3O medium borderline
Bra011280.1-P Alkaloid T3O medium borderline
Bra011678.1-P Alkaloid T3O medium pass
Bra011755.1-P Alkaloid T3O medium borderline
Bra011756.1-P Alkaloid T3O medium borderline
Bra011758.1-P Alkaloid T3O medium borderline
Bra011761.1-P Alkaloid T3O medium borderline
Bra012006.1-P Alkaloid T3O low borderline
Bra012150.1-P Alkaloid T3O medium borderline
Bra012151.1-P Alkaloid T3O medium borderline
Bra012152.1-P Alkaloid T3O medium borderline
Bra012514.1-P Alkaloid T3O medium borderline
Bra012551.1-P Alkaloid T3O medium pass
Bra012792.1-P Alkaloid T3O medium pass
Bra012793.1-P Alkaloid T3O medium pass
Bra013024.1-P Alkaloid T3O medium pass
Bra013227.1-P Alkaloid T3O medium borderline
Bra013386.1-P Alkaloid T3O medium pass
Bra013449.1-P Alkaloid T3O medium borderline
Bra014144.1-P Alkaloid T3O medium pass
Bra014461.1-P Alkaloid T3O medium borderline
Bra014462.1-P Alkaloid T3O medium borderline
Bra014953.1-P Alkaloid T3O medium borderline
Bra015394.1-P Alkaloid T3O medium pass
Bra015934.1-P Alkaloid T3O medium borderline
Bra015998.1-P Alkaloid T3O medium pass
Bra016740.1-P Alkaloid T3O medium borderline
Bra016888.1-P Alkaloid T3O medium borderline
Bra016908.1-P Alkaloid T3O medium borderline
Bra016964.1-P Alkaloid T3O medium borderline
Bra017752.1-P Alkaloid T3O medium borderline
Bra017757.1-P Alkaloid T3O low borderline
Bra017817.1-P Alkaloid T3O medium borderline
Bra017818.1-P Alkaloid T3O medium borderline
Bra018051.1-P Alkaloid T3O low borderline
Bra018069.1-P Alkaloid T3O medium borderline
Bra018471.1-P Alkaloid T3O medium borderline
Bra018856.1-P Alkaloid T3O medium borderline
Bra019551.1-P Alkaloid T3O low borderline
Bra019782.1-P Alkaloid T3O medium pass
Bra019808.1-P Alkaloid T3O medium borderline