PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

2396
Candidate Protein Records
1938
Pathway-Level Records
4856
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
Reset
Protein/Isoform Record Pathway Family Confidence Status
Bra033509.1-P Alkaloid T3O medium borderline
Bra033594.1-P Alkaloid T3O medium borderline
Bra033626.1-P Alkaloid T3O medium pass
Bra033755.1-P Alkaloid T3O medium borderline
Bra034235.1-P Alkaloid T3O medium borderline
Bra034237.1-P Alkaloid T3O medium borderline
Bra034239.1-P Alkaloid T3O medium borderline
Bra035812.1-P Alkaloid T3O medium borderline
Bra035813.1-P Alkaloid T3O medium borderline
Bra035818.1-P Alkaloid T3O medium borderline
Bra036203.1-P Alkaloid T3O medium pass
Bra036342.1-P Alkaloid T3O medium borderline
Bra036343.1-P Alkaloid T3O medium borderline
Bra036344.1-P Alkaloid T3O medium borderline
Bra036345.1-P Alkaloid T3O medium borderline
Bra036346.1-P Alkaloid T3O medium borderline
Bra036533.1-P Alkaloid T3O medium borderline
Bra036897.1-P Alkaloid T3O medium borderline
Bra037119.1-P Alkaloid T3O medium borderline
Bra037219.1-P Alkaloid T3O medium borderline
Bra037336.1-P Alkaloid T3O low borderline
Bra038413.1-P Alkaloid T3O low borderline
Bra038437.1-P Alkaloid T3O medium borderline
Bra038632.1-P Alkaloid T3O low borderline
Bra039231.1-P Alkaloid T3O medium borderline
Bra039329.1-P Alkaloid T3O medium borderline
Bra039554.1-P Alkaloid T3O medium pass
Bra039931.1-P Alkaloid T3O low borderline
Bra040552.1-P Alkaloid T3O low borderline
Bra040762.1-P Alkaloid T3O medium pass
Bra040821.1-P Alkaloid T3O medium borderline
Bra010909.1-P Alkaloid TDC low borderline
Bra027941.1-P Alkaloid TDC low borderline
Bra032190.1-P Alkaloid TDC low borderline
Bra034917.1-P Alkaloid TDC low borderline
Bra000441.1-P Alkaloid TRI/TRII medium pass
Bra000476.1-P Alkaloid TRI/TRII medium pass
Bra000477.1-P Alkaloid TRI/TRII medium pass
Bra001471.1-P Alkaloid TRI/TRII medium pass
Bra002097.1-P Alkaloid TRI/TRII low borderline
Bra004477.1-P Alkaloid TRI/TRII medium pass
Bra005188.1-P Alkaloid TRI/TRII medium pass
Bra007823.1-P Alkaloid TRI/TRII medium pass
Bra009159.1-P Alkaloid TRI/TRII medium pass
Bra009580.1-P Alkaloid TRI/TRII low borderline
Bra010962.1-P Alkaloid TRI/TRII low borderline
Bra012842.1-P Alkaloid TRI/TRII medium pass
Bra014212.1-P Alkaloid TRI/TRII low borderline
Bra014323.1-P Alkaloid TRI/TRII low borderline
Bra014448.1-P Alkaloid TRI/TRII medium pass