PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

2396
Candidate Protein Records
1938
Pathway-Level Records
4856
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 30.86% Alkaloid pathway 22.29% Phenylpropanoid pathway 21.0% Flavonoid pathway 11.92% Rosmarinic acid pathway 7.95% Steroid pathway 5.99%
Family Distribution
BAHD 6.55% C3'H/CYP98A 6.3% C4H 6.18% POD 4.1% CYP76 3.93% IFS 3.87% 4CL 3.52% UGT 3.4%
Other Families 62.15%
More Families (97)
F3H 155 3.19% T3O 154 3.17% UFGT 152 3.13% 7DLGT 148 3.05% DWF4/CYP90B1 138 2.84% NMT 110 2.27% BR6OX2/CYP85A2 108 2.22% F3'H/CYP75B 104 2.14% CODM/T6ODM 99 2.04% STR 80 1.65% SGD 79 1.63% CYP71 75 1.54% TRI/TRII 73 1.5% SMT1/SMT2/SMT3 70 1.44% H6H 68 1.4% CSE 60 1.24% SLS 53 1.09% CAD 49 1.01% PYKS 47 0.97% T16H 44 0.91% CAS 41 0.84% TPS 40 0.82% BBE 39 0.8% COMT 39 0.8% GES 38 0.78% G8O/G8H 38 0.78% IFR 38 0.78% F5H/CYP84A 37 0.76% LAC 36 0.74% RAS 35 0.72% TAT 34 0.7% CYP90D1 34 0.7% ANR 33 0.68% IO 31 0.64% FNS 31 0.64% LAMT 30 0.62% 16OMT 28 0.58% HCT 27 0.56% CCR 26 0.54% GS 24 0.49% PAL 24 0.49% F3'5'H/CYP75A 23 0.47% ANS/LDOX 21 0.43% CYP51G1 20 0.41% 8HGO 19 0.39% CPD/CYP90A1 19 0.39% GGPPS 18 0.37% BR6OX1/CYP85A1 17 0.35% CPR 16 0.33% 7DLH 15 0.31% PMT 14 0.29% NCS 14 0.29% COR 13 0.27% CHS 13 0.27% SQE 13 0.27% FPPS 13 0.27% DFR 11 0.23% CCoAOMT 11 0.23% AACT 11 0.23% MPO 9 0.19% CNMT 9 0.19% SQS/FDFT1 9 0.19% CHI 8 0.16% MVK 8 0.16% HPPR 7 0.14% ROT3/CYP90C1 7 0.14% MVD 7 0.14% CYP719 6 0.12% CYP80F1 6 0.12% TYDC_DDC 6 0.12% DWF7 6 0.12% SMO1/SMO2 6 0.12% ISY 5 0.1% CYP80B1 5 0.1% ADC 5 0.1% XMT_MXMT_DXMT 5 0.1% TDC 4 0.08% DET2 4 0.08% IDI 4 0.08% DXS 4 0.08% HMGR 4 0.08% MCT/IspD 4 0.08% DXR 4 0.08% DWF5 3 0.06% DWF1 3 0.06% PMK 3 0.06% FLS 2 0.04% CPI1 2 0.04% HYD1 2 0.04% HDR/IspH 2 0.04% HMGS 2 0.04% MDS/IspF 2 0.04% 6OMT_4OMT_SOMT 1 0.02% FK 1 0.02% HDS/IspG 1 0.02% GPPS 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status Best Target
Bra039969.1-P Alkaloid TRI/TRII medium pass TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH
Bra039971.1-P Alkaloid TRI/TRII medium pass TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH
Bra039973.1-P Alkaloid TRI/TRII medium pass TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH
Bra039974.1-P Alkaloid TRI/TRII medium pass TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH
Bra039976.1-P Alkaloid TRI/TRII medium pass TRI_TRII__00001__sp_A7DY56_TRN1_COCOF
Bra039977.1-P Alkaloid TRI/TRII medium pass TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH
Bra040871.1-P Alkaloid TRI/TRII low borderline TRI_TRII__00005__sp_P50162_TRN1_DATST
Bra041076.1-P Alkaloid TRI/TRII medium pass TRI_TRII__00005__sp_P50162_TRN1_DATST
Bra011049.1-P Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Bra031116.1-P Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Bra036465.1-P Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Bra036466.1-P Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Bra036683.1-P Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Bra036684.1-P Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Bra009458.1-P Alkaloid XMT_MXMT_DXMT medium borderline XMT_MXMT_DXMT__00005__sp_A4GE69_XMT1_COFCA
Bra009461.1-P Alkaloid XMT_MXMT_DXMT low borderline XMT_MXMT_DXMT__00005__sp_A4GE69_XMT1_COFCA
Bra010555.1-P Alkaloid XMT_MXMT_DXMT medium borderline XMT_MXMT_DXMT__00003__sp_A0A0S2PMA8_TCS1D_CAMTA
Bra012070.1-P Alkaloid XMT_MXMT_DXMT medium borderline XMT_MXMT_DXMT__00004__sp_A0A6C0WW38_CKCS_CAMSB
Bra022603.1-P Alkaloid XMT_MXMT_DXMT medium borderline XMT_MXMT_DXMT__00005__sp_A4GE69_XMT1_COFCA
Bra001177.1-P Flavonoid 4CL low borderline 4CL__00002__sp_I3PB37_4CL1_PETHY
Bra001819.1-P Flavonoid 4CL medium pass 4CL__00015__sp_Q9LU36_4CL4_ARATH
Bra001820.1-P Flavonoid 4CL medium pass 4CL__00015__sp_Q9LU36_4CL4_ARATH
Bra001919.1-P Flavonoid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
Bra002075.1-P Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Bra003678.1-P Flavonoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Bra004109.1-P Flavonoid 4CL medium pass 4CL__00018__sp_Q9S777_4CL3_ARATH
Bra004132.1-P Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Bra004467.1-P Flavonoid 4CL low borderline 4CL__00018__sp_Q9S777_4CL3_ARATH
Bra006350.1-P Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Bra006421.1-P Flavonoid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
Bra008232.1-P Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Bra008297.1-P Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Bra009951.1-P Flavonoid 4CL low borderline 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ
Bra012232.1-P Flavonoid 4CL medium pass 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Bra012233.1-P Flavonoid 4CL medium pass 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Bra013210.1-P Flavonoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Bra013369.1-P Flavonoid 4CL medium pass 4CL__00014__sp_Q84P24_4CLL6_ARATH
Bra013735.1-P Flavonoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
Bra015683.1-P Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Bra016463.1-P Flavonoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Bra016464.1-P Flavonoid 4CL medium pass 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Bra016465.1-P Flavonoid 4CL medium pass 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Bra016466.1-P Flavonoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Bra017925.1-P Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Bra018019.1-P Flavonoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Bra019596.1-P Flavonoid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
Bra020793.1-P Flavonoid 4CL low borderline 4CL__00018__sp_Q9S777_4CL3_ARATH
Bra021166.1-P Flavonoid 4CL low borderline 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ
Bra021392.1-P Flavonoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Bra022186.1-P Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY