PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

2396
Candidate Protein Records
1938
Pathway-Level Records
4856
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Bra023562.1-P Flavonoid 4CL medium pass
Bra025822.1-P Flavonoid 4CL medium pass
Bra025823.1-P Flavonoid 4CL low borderline
Bra025827.1-P Flavonoid 4CL medium pass
Bra026906.1-P Flavonoid 4CL medium pass
Bra027186.1-P Flavonoid 4CL low borderline
Bra027700.1-P Flavonoid 4CL low borderline
Bra029229.1-P Flavonoid 4CL medium pass
Bra029560.1-P Flavonoid 4CL medium pass
Bra029561.1-P Flavonoid 4CL medium pass
Bra030286.1-P Flavonoid 4CL low borderline
Bra030429.1-P Flavonoid 4CL medium pass
Bra031262.1-P Flavonoid 4CL low borderline
Bra031263.1-P Flavonoid 4CL medium pass
Bra031265.1-P Flavonoid 4CL medium pass
Bra031266.1-P Flavonoid 4CL medium pass
Bra032284.1-P Flavonoid 4CL low borderline
Bra032398.1-P Flavonoid 4CL low borderline
Bra032757.1-P Flavonoid 4CL low borderline
Bra033159.1-P Flavonoid 4CL low borderline
Bra035259.1-P Flavonoid 4CL low borderline
Bra036646.1-P Flavonoid 4CL low borderline
Bra037198.1-P Flavonoid 4CL medium pass
Bra038189.1-P Flavonoid 4CL medium pass
Bra039743.1-P Flavonoid 4CL medium pass
Bra041146.1-P Flavonoid 4CL medium pass
Bra002236.1-P Flavonoid ANR medium borderline
Bra002645.1-P Flavonoid ANR medium borderline
Bra004316.1-P Flavonoid ANR medium borderline
Bra004907.1-P Flavonoid ANR medium pass
Bra007764.1-P Flavonoid ANR low borderline
Bra008438.1-P Flavonoid ANR medium borderline
Bra008743.1-P Flavonoid ANR low borderline
Bra008822.1-P Flavonoid ANR medium borderline
Bra013551.1-P Flavonoid ANR low borderline
Bra014263.1-P Flavonoid ANR medium borderline
Bra015621.1-P Flavonoid ANR low borderline
Bra015743.1-P Flavonoid ANR low borderline
Bra019062.1-P Flavonoid ANR medium borderline
Bra020019.1-P Flavonoid ANR medium borderline
Bra020020.1-P Flavonoid ANR medium borderline
Bra020021.1-P Flavonoid ANR medium borderline
Bra021318.1-P Flavonoid ANR medium borderline
Bra021863.1-P Flavonoid ANR medium borderline
Bra023231.1-P Flavonoid ANR medium borderline
Bra023481.1-P Flavonoid ANR low borderline
Bra024744.1-P Flavonoid ANR medium borderline
Bra026090.1-P Flavonoid ANR medium borderline
Bra026600.1-P Flavonoid ANR medium borderline
Bra026737.1-P Flavonoid ANR medium borderline