Brassica rapa (brassica_rapa)
Imported from atlas release summary for Brassica rapa.
2396
Candidate Protein Records
1938
Pathway-Level Records
4856
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4856
Family-Level Calls
BAHD
6.55%
C3'H/CYP98A
6.3%
C4H
6.18%
POD
4.1%
CYP76
3.93%
IFS
3.87%
4CL
3.52%
UGT
3.4%
Other Families
62.15%
More Families (97)
F3H
155
3.19%
T3O
154
3.17%
UFGT
152
3.13%
7DLGT
148
3.05%
DWF4/CYP90B1
138
2.84%
NMT
110
2.27%
BR6OX2/CYP85A2
108
2.22%
F3'H/CYP75B
104
2.14%
CODM/T6ODM
99
2.04%
STR
80
1.65%
SGD
79
1.63%
CYP71
75
1.54%
TRI/TRII
73
1.5%
SMT1/SMT2/SMT3
70
1.44%
H6H
68
1.4%
CSE
60
1.24%
SLS
53
1.09%
CAD
49
1.01%
PYKS
47
0.97%
T16H
44
0.91%
CAS
41
0.84%
TPS
40
0.82%
BBE
39
0.8%
COMT
39
0.8%
GES
38
0.78%
G8O/G8H
38
0.78%
IFR
38
0.78%
F5H/CYP84A
37
0.76%
LAC
36
0.74%
RAS
35
0.72%
TAT
34
0.7%
CYP90D1
34
0.7%
ANR
33
0.68%
IO
31
0.64%
FNS
31
0.64%
LAMT
30
0.62%
16OMT
28
0.58%
HCT
27
0.56%
CCR
26
0.54%
GS
24
0.49%
PAL
24
0.49%
F3'5'H/CYP75A
23
0.47%
ANS/LDOX
21
0.43%
CYP51G1
20
0.41%
8HGO
19
0.39%
CPD/CYP90A1
19
0.39%
GGPPS
18
0.37%
BR6OX1/CYP85A1
17
0.35%
CPR
16
0.33%
7DLH
15
0.31%
PMT
14
0.29%
NCS
14
0.29%
COR
13
0.27%
CHS
13
0.27%
SQE
13
0.27%
FPPS
13
0.27%
DFR
11
0.23%
CCoAOMT
11
0.23%
AACT
11
0.23%
MPO
9
0.19%
CNMT
9
0.19%
SQS/FDFT1
9
0.19%
CHI
8
0.16%
MVK
8
0.16%
HPPR
7
0.14%
ROT3/CYP90C1
7
0.14%
MVD
7
0.14%
CYP719
6
0.12%
CYP80F1
6
0.12%
TYDC_DDC
6
0.12%
DWF7
6
0.12%
SMO1/SMO2
6
0.12%
ISY
5
0.1%
CYP80B1
5
0.1%
ADC
5
0.1%
XMT_MXMT_DXMT
5
0.1%
TDC
4
0.08%
DET2
4
0.08%
IDI
4
0.08%
DXS
4
0.08%
HMGR
4
0.08%
MCT/IspD
4
0.08%
DXR
4
0.08%
DWF5
3
0.06%
DWF1
3
0.06%
PMK
3
0.06%
FLS
2
0.04%
CPI1
2
0.04%
HYD1
2
0.04%
HDR/IspH
2
0.04%
HMGS
2
0.04%
MDS/IspF
2
0.04%
6OMT_4OMT_SOMT
1
0.02%
FK
1
0.02%
HDS/IspG
1
0.02%
GPPS
1
0.02%
CMK/IspE
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 598 | 20 | BAHD (263) | View species results |
| Alkaloid pathway | 432 | 17 | 7DLGT (75) | View species results |
| Phenylpropanoid pathway | 407 | 11 | POD (183) | View species results |
| Flavonoid pathway | 231 | 11 | UFGT (148) | View species results |
| Rosmarinic acid pathway | 154 | 7 | C4H (63) | View species results |
| Steroid pathway | 116 | 13 | SMT1/SMT2/SMT3 (42) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1919 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 380 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Bra039969.1-P | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Bra039971.1-P | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Bra039973.1-P | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Bra039974.1-P | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Bra039976.1-P | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Bra039977.1-P | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Bra040871.1-P | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Bra041076.1-P | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Bra011049.1-P | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH |
| Bra031116.1-P | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH |
| Bra036465.1-P | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH |
| Bra036466.1-P | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH |
| Bra036683.1-P | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH |
| Bra036684.1-P | Alkaloid | TYDC_DDC | medium | borderline | TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH |
| Bra009458.1-P | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00005__sp_A4GE69_XMT1_COFCA |
| Bra009461.1-P | Alkaloid | XMT_MXMT_DXMT | low | borderline | XMT_MXMT_DXMT__00005__sp_A4GE69_XMT1_COFCA |
| Bra010555.1-P | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00003__sp_A0A0S2PMA8_TCS1D_CAMTA |
| Bra012070.1-P | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00004__sp_A0A6C0WW38_CKCS_CAMSB |
| Bra022603.1-P | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00005__sp_A4GE69_XMT1_COFCA |