PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

1938
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
Bra022979.1-P Flavonoid ANS/LDOX medium borderline
Bra030187.1-P Flavonoid ANS/LDOX medium borderline
Bra030461.1-P Flavonoid ANS/LDOX medium borderline
Bra030500.1-P Flavonoid ANS/LDOX medium borderline
Bra031090.1-P Flavonoid ANS/LDOX medium borderline
Bra032238.1-P Flavonoid ANS/LDOX medium borderline
Bra033324.1-P Flavonoid ANS/LDOX medium borderline
Bra035037.1-P Flavonoid ANS/LDOX medium borderline
Bra037633.1-P Flavonoid ANS/LDOX medium borderline
Bra039219.1-P Flavonoid ANS/LDOX low borderline
Bra040443.1-P Flavonoid ANS/LDOX low borderline
Bra000843.1-P Flavonoid C4H low borderline
Bra009868.1-P Flavonoid C4H medium borderline
Bra012792.1-P Flavonoid C4H low borderline
Bra018311.1-P Flavonoid C4H medium borderline
Bra021636.1-P Flavonoid C4H medium borderline
Bra021637.1-P Flavonoid C4H medium borderline
Bra027136.1-P Flavonoid C4H low borderline
Bra039554.1-P Flavonoid C4H low borderline
Bra003209.1-P Flavonoid CHI medium pass
Bra007142.1-P Flavonoid CHI medium pass
Bra007145.1-P Flavonoid CHI medium pass
Bra009101.1-P Flavonoid CHI medium pass
Bra017728.1-P Flavonoid CHI medium pass
Bra018278.1-P Flavonoid CHI low borderline
Bra022826.1-P Flavonoid CHI low borderline
Bra039362.1-P Flavonoid CHI medium pass
Bra000559.1-P Flavonoid CHS medium pass
Bra006224.1-P Flavonoid CHS medium pass
Bra008792.1-P Flavonoid CHS medium pass
Bra011566.1-P Flavonoid CHS medium pass
Bra017147.1-P Flavonoid CHS low borderline
Bra017681.1-P Flavonoid CHS medium pass
Bra018109.1-P Flavonoid CHS medium pass
Bra020687.1-P Flavonoid CHS low borderline
Bra020688.1-P Flavonoid CHS medium pass
Bra023441.1-P Flavonoid CHS medium pass
Bra034658.1-P Flavonoid CHS medium pass
Bra036307.1-P Flavonoid CHS medium pass
Bra041147.1-P Flavonoid CHS low borderline
Bra010535.1-P Flavonoid DFR medium borderline
Bra013768.1-P Flavonoid DFR medium borderline
Bra013769.1-P Flavonoid DFR medium borderline
Bra015740.1-P Flavonoid DFR medium borderline
Bra017642.1-P Flavonoid DFR low borderline
Bra020621.1-P Flavonoid DFR medium borderline
Bra024073.1-P Flavonoid DFR low borderline
Bra024746.1-P Flavonoid DFR medium pass
Bra024747.1-P Flavonoid DFR medium pass
Bra030206.1-P Flavonoid DFR medium borderline