PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

2396
Candidate Protein Records
1938
Pathway-Level Records
4856
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Bra018793.1-P Flavonoid UFGT medium pass
Bra018901.1-P Flavonoid UFGT medium pass
Bra020310.1-P Flavonoid UFGT high pass
Bra020468.1-P Flavonoid UFGT low borderline
Bra021740.1-P Flavonoid UFGT high pass
Bra021743.1-P Flavonoid UFGT medium pass
Bra021887.1-P Flavonoid UFGT medium pass
Bra022165.1-P Flavonoid UFGT high pass
Bra022688.1-P Flavonoid UFGT high pass
Bra022689.1-P Flavonoid UFGT high pass
Bra022781.1-P Flavonoid UFGT medium pass
Bra022864.1-P Flavonoid UFGT high pass
Bra023079.1-P Flavonoid UFGT medium pass
Bra023080.1-P Flavonoid UFGT medium pass
Bra023081.1-P Flavonoid UFGT medium pass
Bra023594.1-P Flavonoid UFGT high pass
Bra023841.1-P Flavonoid UFGT medium pass
Bra023861.1-P Flavonoid UFGT high pass
Bra023863.1-P Flavonoid UFGT medium pass
Bra023872.1-P Flavonoid UFGT medium pass
Bra024461.1-P Flavonoid UFGT high pass
Bra024634.1-P Flavonoid UFGT medium pass
Bra028098.1-P Flavonoid UFGT high pass
Bra029045.1-P Flavonoid UFGT high pass
Bra029046.1-P Flavonoid UFGT high pass
Bra029047.1-P Flavonoid UFGT medium pass
Bra029049.1-P Flavonoid UFGT high pass
Bra030620.1-P Flavonoid UFGT medium pass
Bra031102.1-P Flavonoid UFGT medium pass
Bra031290.1-P Flavonoid UFGT medium pass
Bra031303.1-P Flavonoid UFGT high pass
Bra031304.1-P Flavonoid UFGT medium pass
Bra031306.1-P Flavonoid UFGT high pass
Bra031307.1-P Flavonoid UFGT high pass
Bra031310.1-P Flavonoid UFGT high pass
Bra031343.1-P Flavonoid UFGT high pass
Bra031386.1-P Flavonoid UFGT high pass
Bra031387.1-P Flavonoid UFGT medium pass
Bra031388.1-P Flavonoid UFGT medium pass
Bra031483.1-P Flavonoid UFGT medium pass
Bra031559.1-P Flavonoid UFGT medium pass
Bra031561.1-P Flavonoid UFGT medium pass
Bra032179.1-P Flavonoid UFGT medium pass
Bra033266.1-P Flavonoid UFGT medium pass
Bra033494.1-P Flavonoid UFGT medium pass
Bra033807.1-P Flavonoid UFGT high pass
Bra033808.1-P Flavonoid UFGT high pass
Bra033891.1-P Flavonoid UFGT high pass
Bra034386.1-P Flavonoid UFGT medium pass
Bra034608.1-P Flavonoid UFGT medium pass