Brassica rapa (brassica_rapa)

This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Download candidate protein FASTA for this species

Pathway Coverage

6 Pathways

Terpenoid pathway 30.86% Alkaloid pathway 22.29% Phenylpropanoid pathway 21.0% Flavonoid pathway 11.92% Rosmarinic acid pathway 7.95% Steroid pathway 5.99%

Family Distribution

4856 Family-Level Calls

BAHD 6.55% C3'H/CYP98A 6.3% C4H 6.18% POD 4.1% CYP76 3.93% IFS 3.87% 4CL 3.52% UGT 3.4%

Other Families 62.15%

More Families (97)

F3H 155 3.19% T3O 154 3.17% UFGT 152 3.13% 7DLGT 148 3.05% DWF4/CYP90B1 138 2.84% NMT 110 2.27% BR6OX2/CYP85A2 108 2.22% F3'H/CYP75B 104 2.14% CODM/T6ODM 99 2.04% STR 80 1.65% SGD 79 1.63% CYP71 75 1.54% TRI/TRII 73 1.5% SMT1/SMT2/SMT3 70 1.44% H6H 68 1.4% CSE 60 1.24% SLS 53 1.09% CAD 49 1.01% PYKS 47 0.97% T16H 44 0.91% CAS 41 0.84% TPS 40 0.82% BBE 39 0.8% COMT 39 0.8% GES 38 0.78% G8O/G8H 38 0.78% IFR 38 0.78% F5H/CYP84A 37 0.76% LAC 36 0.74% RAS 35 0.72% TAT 34 0.7% CYP90D1 34 0.7% ANR 33 0.68% IO 31 0.64% FNS 31 0.64% LAMT 30 0.62% 16OMT 28 0.58% HCT 27 0.56% CCR 26 0.54% GS 24 0.49% PAL 24 0.49% F3'5'H/CYP75A 23 0.47% ANS/LDOX 21 0.43% CYP51G1 20 0.41% 8HGO 19 0.39% CPD/CYP90A1 19 0.39% GGPPS 18 0.37% BR6OX1/CYP85A1 17 0.35% CPR 16 0.33% 7DLH 15 0.31% PMT 14 0.29% NCS 14 0.29% COR 13 0.27% CHS 13 0.27% SQE 13 0.27% FPPS 13 0.27% DFR 11 0.23% CCoAOMT 11 0.23% AACT 11 0.23% MPO 9 0.19% CNMT 9 0.19% SQS/FDFT1 9 0.19% CHI 8 0.16% MVK 8 0.16% HPPR 7 0.14% ROT3/CYP90C1 7 0.14% MVD 7 0.14% CYP719 6 0.12% CYP80F1 6 0.12% TYDC_DDC 6 0.12% DWF7 6 0.12% SMO1/SMO2 6 0.12% ISY 5 0.1% CYP80B1 5 0.1% ADC 5 0.1% XMT_MXMT_DXMT 5 0.1% TDC 4 0.08% DET2 4 0.08% IDI 4 0.08% DXS 4 0.08% HMGR 4 0.08% MCT/IspD 4 0.08% DXR 4 0.08% DWF5 3 0.06% DWF1 3 0.06% PMK 3 0.06% FLS 2 0.04% CPI1 2 0.04% HYD1 2 0.04% HDR/IspH 2 0.04% HMGS 2 0.04% MDS/IspF 2 0.04% 6OMT_4OMT_SOMT 1 0.02% FK 1 0.02% HDS/IspG 1 0.02% GPPS 1 0.02% CMK/IspE 1 0.02%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Pathway-Level Records	Detected Families	Top family	Results
Terpenoid pathway	598	20	BAHD (263)	View species results
Alkaloid pathway	432	17	7DLGT (75)	View species results
Phenylpropanoid pathway	407	11	POD (183)	View species results
Flavonoid pathway	231	11	UFGT (148)	View species results
Rosmarinic acid pathway	154	7	C4H (63)	View species results
Steroid pathway	116	13	SMT1/SMT2/SMT3 (42)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Detected families	Assignment calls	Included families
P450/oxygenase	24	1919	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	380	BAHD, HCT, RAS

Identification Result List

Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.

Protein/Isoform Record	Pathway	Family	Confidence	Status
Bra034609.1-P	Flavonoid	UFGT	high	pass
Bra034610.1-P	Flavonoid	UFGT	high	pass
Bra034848.1-P	Flavonoid	UFGT	medium	pass
Bra035004.1-P	Flavonoid	UFGT	medium	pass
Bra035271.1-P	Flavonoid	UFGT	high	pass
Bra037155.1-P	Flavonoid	UFGT	medium	pass
Bra037386.1-P	Flavonoid	UFGT	medium	pass
Bra037821.1-P	Flavonoid	UFGT	high	pass
Bra038079.1-P	Flavonoid	UFGT	medium	pass
Bra038080.1-P	Flavonoid	UFGT	medium	pass
Bra038445.1-P	Flavonoid	UFGT	medium	pass
Bra038502.1-P	Flavonoid	UFGT	low	borderline
Bra038862.1-P	Flavonoid	UFGT	medium	pass
Bra039152.1-P	Flavonoid	UFGT	medium	pass
Bra039191.1-P	Flavonoid	UFGT	medium	pass
Bra039192.1-P	Flavonoid	UFGT	medium	pass
Bra039544.1-P	Flavonoid	UFGT	high	pass
Bra039545.1-P	Flavonoid	UFGT	medium	pass
Bra039547.1-P	Flavonoid	UFGT	high	pass
Bra039557.1-P	Flavonoid	UFGT	medium	pass
Bra040690.1-P	Flavonoid	UFGT	medium	pass
Bra001177.1-P	Phenylpropanoid	4CL	low	borderline
Bra001819.1-P	Phenylpropanoid	4CL	medium	pass
Bra001820.1-P	Phenylpropanoid	4CL	medium	pass
Bra001919.1-P	Phenylpropanoid	4CL	low	borderline
Bra002075.1-P	Phenylpropanoid	4CL	medium	pass
Bra003678.1-P	Phenylpropanoid	4CL	low	borderline
Bra004109.1-P	Phenylpropanoid	4CL	medium	pass
Bra004132.1-P	Phenylpropanoid	4CL	medium	pass
Bra004467.1-P	Phenylpropanoid	4CL	low	borderline
Bra006350.1-P	Phenylpropanoid	4CL	medium	pass
Bra006421.1-P	Phenylpropanoid	4CL	low	borderline
Bra008232.1-P	Phenylpropanoid	4CL	medium	pass
Bra008297.1-P	Phenylpropanoid	4CL	medium	pass
Bra009951.1-P	Phenylpropanoid	4CL	low	borderline
Bra012232.1-P	Phenylpropanoid	4CL	medium	pass
Bra012233.1-P	Phenylpropanoid	4CL	medium	pass
Bra013210.1-P	Phenylpropanoid	4CL	low	borderline
Bra013369.1-P	Phenylpropanoid	4CL	medium	pass
Bra013735.1-P	Phenylpropanoid	4CL	low	borderline
Bra015683.1-P	Phenylpropanoid	4CL	medium	pass
Bra016463.1-P	Phenylpropanoid	4CL	medium	pass
Bra016464.1-P	Phenylpropanoid	4CL	medium	pass
Bra016465.1-P	Phenylpropanoid	4CL	medium	pass
Bra016466.1-P	Phenylpropanoid	4CL	medium	pass
Bra017925.1-P	Phenylpropanoid	4CL	medium	pass
Bra018019.1-P	Phenylpropanoid	4CL	medium	pass
Bra019596.1-P	Phenylpropanoid	4CL	low	borderline
Bra020793.1-P	Phenylpropanoid	4CL	low	borderline
Bra021166.1-P	Phenylpropanoid	4CL	low	borderline