PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

1938
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.86% Alkaloid pathway 22.29% Phenylpropanoid pathway 21.0% Flavonoid pathway 11.92% Rosmarinic acid pathway 7.95% Steroid pathway 5.99%
Family Distribution
BAHD 6.55% C3'H/CYP98A 6.3% C4H 6.18% POD 4.1% CYP76 3.93% IFS 3.87% 4CL 3.52% UGT 3.4%
Other Families 62.15%
More Families (97)
F3H 155 3.19% T3O 154 3.17% UFGT 152 3.13% 7DLGT 148 3.05% DWF4/CYP90B1 138 2.84% NMT 110 2.27% BR6OX2/CYP85A2 108 2.22% F3'H/CYP75B 104 2.14% CODM/T6ODM 99 2.04% STR 80 1.65% SGD 79 1.63% CYP71 75 1.54% TRI/TRII 73 1.5% SMT1/SMT2/SMT3 70 1.44% H6H 68 1.4% CSE 60 1.24% SLS 53 1.09% CAD 49 1.01% PYKS 47 0.97% T16H 44 0.91% CAS 41 0.84% TPS 40 0.82% BBE 39 0.8% COMT 39 0.8% GES 38 0.78% G8O/G8H 38 0.78% IFR 38 0.78% F5H/CYP84A 37 0.76% LAC 36 0.74% RAS 35 0.72% TAT 34 0.7% CYP90D1 34 0.7% ANR 33 0.68% IO 31 0.64% FNS 31 0.64% LAMT 30 0.62% 16OMT 28 0.58% HCT 27 0.56% CCR 26 0.54% GS 24 0.49% PAL 24 0.49% F3'5'H/CYP75A 23 0.47% ANS/LDOX 21 0.43% CYP51G1 20 0.41% 8HGO 19 0.39% CPD/CYP90A1 19 0.39% GGPPS 18 0.37% BR6OX1/CYP85A1 17 0.35% CPR 16 0.33% 7DLH 15 0.31% PMT 14 0.29% NCS 14 0.29% COR 13 0.27% CHS 13 0.27% SQE 13 0.27% FPPS 13 0.27% DFR 11 0.23% CCoAOMT 11 0.23% AACT 11 0.23% MPO 9 0.19% CNMT 9 0.19% SQS/FDFT1 9 0.19% CHI 8 0.16% MVK 8 0.16% HPPR 7 0.14% ROT3/CYP90C1 7 0.14% MVD 7 0.14% CYP719 6 0.12% CYP80F1 6 0.12% TYDC_DDC 6 0.12% DWF7 6 0.12% SMO1/SMO2 6 0.12% ISY 5 0.1% CYP80B1 5 0.1% ADC 5 0.1% XMT_MXMT_DXMT 5 0.1% TDC 4 0.08% DET2 4 0.08% IDI 4 0.08% DXS 4 0.08% HMGR 4 0.08% MCT/IspD 4 0.08% DXR 4 0.08% DWF5 3 0.06% DWF1 3 0.06% PMK 3 0.06% FLS 2 0.04% CPI1 2 0.04% HYD1 2 0.04% HDR/IspH 2 0.04% HMGS 2 0.04% MDS/IspF 2 0.04% 6OMT_4OMT_SOMT 1 0.02% FK 1 0.02% HDS/IspG 1 0.02% GPPS 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Gene Pathway Family Confidence Status Best Target
Bra025403.1-P Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
Bra025524.1-P Terpenoid BAHD medium pass BAHD__00076__sp_Q9FLM3_ZDH23_ARATH
Bra025527.1-P Terpenoid BAHD medium pass BAHD__00074__sp_Q9FFQ7_FACT_ARATH
Bra025601.1-P Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH
Bra025640.1-P Terpenoid BAHD medium pass BAHD__00026__sp_O64811_SCP9_ARATH
Bra026171.1-P Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
Bra026472.1-P Terpenoid BAHD medium pass BAHD__00024__sp_O23393_BIA1_ARATH
Bra026489.1-P Terpenoid BAHD low borderline BAHD__00059__sp_Q8S8S2_LPCT2_ARATH
Bra026787.1-P Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
Bra027001.1-P Terpenoid BAHD medium pass BAHD__00070__sp_Q9CAN8_MBOA2_ARATH
Bra027386.1-P Terpenoid BAHD medium pass BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
Bra027762.1-P Terpenoid BAHD medium pass BAHD__00049__sp_Q5PNZ1_ZDH21_ARATH
Bra028199.1-P Terpenoid BAHD low borderline BAHD__00081__sp_Q9LJB4_5MAT_ARATH
Bra028224.1-P Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
Bra028235.1-P Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
Bra028426.1-P Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
Bra028482.1-P Terpenoid BAHD medium pass BAHD__00074__sp_Q9FFQ7_FACT_ARATH
Bra028484.1-P Terpenoid BAHD medium pass BAHD__00076__sp_Q9FLM3_ZDH23_ARATH
Bra028627.1-P Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
Bra028682.1-P Terpenoid BAHD low borderline BAHD__00001__sp_A0A068BGA5_AT1_ACTDE
Bra028893.1-P Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
Bra028984.1-P Terpenoid BAHD medium pass BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH
Bra028985.1-P Terpenoid BAHD medium pass BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH
Bra029052.1-P Terpenoid BAHD low borderline BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH
Bra029072.1-P Terpenoid BAHD medium pass BAHD__00047__sp_Q5KS41_WSD11_ARATH
Bra029363.1-P Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH
Bra029388.1-P Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
Bra029691.1-P Terpenoid BAHD medium pass BAHD__00026__sp_O64811_SCP9_ARATH
Bra029760.1-P Terpenoid BAHD medium pass BAHD__00063__sp_Q93VV0_ZDHC6_ARATH
Bra029836.1-P Terpenoid BAHD low borderline BAHD__00055__sp_Q8H780_SCP13_ARATH
Bra029842.1-P Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
Bra029938.1-P Terpenoid BAHD medium pass BAHD__00087__sp_Q9M3B1_WSD6_ARATH
Bra029939.1-P Terpenoid BAHD medium pass BAHD__00087__sp_Q9M3B1_WSD6_ARATH
Bra029991.1-P Terpenoid BAHD low borderline BAHD__00055__sp_Q8H780_SCP13_ARATH
Bra029999.1-P Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
Bra030052.1-P Terpenoid BAHD low borderline BAHD__00077__sp_Q9FNA9_PDAT1_ARATH
Bra030190.1-P Terpenoid BAHD medium pass BAHD__00024__sp_O23393_BIA1_ARATH
Bra030195.1-P Terpenoid BAHD medium pass BAHD__00024__sp_O23393_BIA1_ARATH
Bra030279.1-P Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
Bra030347.1-P Terpenoid BAHD medium pass BAHD__00066__sp_Q94CK0_WSD7_ARATH
Bra030351.1-P Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
Bra030359.1-P Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
Bra030360.1-P Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
Bra030448.1-P Terpenoid BAHD medium pass BAHD__00094__sp_Q9SYC8_LPAT3_ARATH
Bra031453.1-P Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH
Bra031989.1-P Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
Bra031990.1-P Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
Bra031998.1-P Terpenoid BAHD low borderline BAHD__00062__sp_Q93V61_LCAT3_ARATH
Bra032189.1-P Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH
Bra032533.1-P Terpenoid BAHD medium pass BAHD__00041__sp_Q4VCM1_LCAT2_ARATH