PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

2396
Candidate Protein Records
1938
Pathway-Level Records
4856
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Bra023481.1-P Phenylpropanoid CCR medium pass
Bra024073.1-P Phenylpropanoid CCR medium borderline
Bra024744.1-P Phenylpropanoid CCR medium borderline
Bra024746.1-P Phenylpropanoid CCR medium borderline
Bra024747.1-P Phenylpropanoid CCR medium pass
Bra026090.1-P Phenylpropanoid CCR medium borderline
Bra026600.1-P Phenylpropanoid CCR medium borderline
Bra026737.1-P Phenylpropanoid CCR medium borderline
Bra027457.1-P Phenylpropanoid CCR medium borderline
Bra030206.1-P Phenylpropanoid CCR low borderline
Bra032137.1-P Phenylpropanoid CCR medium pass
Bra035150.1-P Phenylpropanoid CCR medium borderline
Bra040313.1-P Phenylpropanoid CCR medium borderline
Bra004273.1-P Phenylpropanoid CCoAOMT medium pass
Bra007649.1-P Phenylpropanoid CCoAOMT medium pass
Bra010977.1-P Phenylpropanoid CCoAOMT medium pass
Bra012494.1-P Phenylpropanoid CCoAOMT medium pass
Bra017624.1-P Phenylpropanoid CCoAOMT medium pass
Bra026453.1-P Phenylpropanoid CCoAOMT medium pass
Bra026454.1-P Phenylpropanoid CCoAOMT medium pass
Bra033967.1-P Phenylpropanoid CCoAOMT medium pass
Bra033968.1-P Phenylpropanoid CCoAOMT medium pass
Bra034600.1-P Phenylpropanoid CCoAOMT medium pass
Bra039853.1-P Phenylpropanoid CCoAOMT medium pass
Bra001772.1-P Phenylpropanoid COMT low borderline
Bra003007.1-P Phenylpropanoid COMT medium pass
Bra003009.1-P Phenylpropanoid COMT medium pass
Bra003524.1-P Phenylpropanoid COMT low borderline
Bra003680.1-P Phenylpropanoid COMT medium pass
Bra003681.1-P Phenylpropanoid COMT medium pass
Bra003682.1-P Phenylpropanoid COMT medium pass
Bra003707.1-P Phenylpropanoid COMT medium pass
Bra008313.1-P Phenylpropanoid COMT medium pass
Bra008316.1-P Phenylpropanoid COMT medium pass
Bra010226.1-P Phenylpropanoid COMT medium pass
Bra011292.1-P Phenylpropanoid COMT medium pass
Bra012268.1-P Phenylpropanoid COMT medium pass
Bra012269.1-P Phenylpropanoid COMT medium pass
Bra012270.1-P Phenylpropanoid COMT medium pass
Bra015664.1-P Phenylpropanoid COMT medium pass
Bra015719.1-P Phenylpropanoid COMT medium pass
Bra016432.1-P Phenylpropanoid COMT medium pass
Bra016433.1-P Phenylpropanoid COMT medium pass
Bra017699.1-P Phenylpropanoid COMT medium pass
Bra017700.1-P Phenylpropanoid COMT medium pass
Bra019031.1-P Phenylpropanoid COMT medium pass
Bra022700.1-P Phenylpropanoid COMT medium pass
Bra025874.1-P Phenylpropanoid COMT medium pass
Bra025875.1-P Phenylpropanoid COMT medium pass
Bra025876.1-P Phenylpropanoid COMT medium pass