PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

2396
Candidate Protein Records
1938
Pathway-Level Records
4856
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Bra026320.1-P Phenylpropanoid COMT medium pass
Bra027815.1-P Phenylpropanoid COMT medium pass
Bra029041.1-P Phenylpropanoid COMT medium pass
Bra033498.1-P Phenylpropanoid COMT medium pass
Bra033733.1-P Phenylpropanoid COMT medium pass
Bra034677.1-P Phenylpropanoid COMT medium pass
Bra034678.1-P Phenylpropanoid COMT low borderline
Bra035007.1-P Phenylpropanoid COMT low borderline
Bra035481.1-P Phenylpropanoid COMT medium pass
Bra035482.1-P Phenylpropanoid COMT medium pass
Bra035822.1-P Phenylpropanoid COMT low borderline
Bra038396.1-P Phenylpropanoid COMT medium pass
Bra040689.1-P Phenylpropanoid COMT medium pass
Bra000456.1-P Phenylpropanoid CSE low borderline
Bra000615.1-P Phenylpropanoid CSE medium pass
Bra002224.1-P Phenylpropanoid CSE medium pass
Bra002485.1-P Phenylpropanoid CSE medium pass
Bra003685.1-P Phenylpropanoid CSE medium pass
Bra005479.1-P Phenylpropanoid CSE medium pass
Bra006663.1-P Phenylpropanoid CSE low borderline
Bra006666.1-P Phenylpropanoid CSE medium pass
Bra007118.1-P Phenylpropanoid CSE medium pass
Bra007707.1-P Phenylpropanoid CSE medium pass
Bra008307.1-P Phenylpropanoid CSE medium pass
Bra008644.1-P Phenylpropanoid CSE medium pass
Bra008947.1-P Phenylpropanoid CSE medium pass
Bra010592.1-P Phenylpropanoid CSE medium pass
Bra010706.1-P Phenylpropanoid CSE medium pass
Bra011608.1-P Phenylpropanoid CSE medium pass
Bra011746.1-P Phenylpropanoid CSE medium pass
Bra011877.1-P Phenylpropanoid CSE medium pass
Bra012021.1-P Phenylpropanoid CSE medium pass
Bra012252.1-P Phenylpropanoid CSE medium pass
Bra012733.1-P Phenylpropanoid CSE medium pass
Bra013705.1-P Phenylpropanoid CSE medium pass
Bra014057.1-P Phenylpropanoid CSE medium pass
Bra014196.1-P Phenylpropanoid CSE medium pass
Bra014197.1-P Phenylpropanoid CSE medium pass
Bra014388.1-P Phenylpropanoid CSE medium pass
Bra015487.1-P Phenylpropanoid CSE medium pass
Bra015489.1-P Phenylpropanoid CSE low borderline
Bra016447.1-P Phenylpropanoid CSE medium pass
Bra017077.1-P Phenylpropanoid CSE medium pass
Bra017990.1-P Phenylpropanoid CSE medium pass
Bra018066.1-P Phenylpropanoid CSE medium pass
Bra018067.1-P Phenylpropanoid CSE medium pass
Bra018986.1-P Phenylpropanoid CSE medium pass
Bra019592.1-P Phenylpropanoid CSE medium pass
Bra019882.1-P Phenylpropanoid CSE medium pass
Bra019982.1-P Phenylpropanoid CSE medium pass