PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

2396
Candidate Protein Records
1938
Pathway-Level Records
4856
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Bra007813.1-P Flavonoid F3H medium borderline
Bra008302.1-P Flavonoid F3H medium borderline
Bra008480.1-P Flavonoid F3H medium borderline
Bra008481.1-P Flavonoid F3H medium borderline
Bra008482.1-P Flavonoid F3H low borderline
Bra009258.1-P Flavonoid F3H medium pass
Bra009358.1-P Flavonoid F3H medium borderline
Bra009771.1-P Flavonoid F3H medium borderline
Bra010064.1-P Flavonoid F3H medium pass
Bra010405.1-P Flavonoid F3H low borderline
Bra010469.1-P Flavonoid F3H medium borderline
Bra010470.1-P Flavonoid F3H medium borderline
Bra010472.1-P Flavonoid F3H medium borderline
Bra010802.1-P Flavonoid F3H medium borderline
Bra012691.1-P Flavonoid F3H medium borderline
Bra012862.1-P Flavonoid F3H medium borderline
Bra013512.1-P Flavonoid F3H medium pass
Bra013652.1-P Flavonoid F3H medium borderline
Bra013884.1-P Flavonoid F3H medium borderline
Bra013890.1-P Flavonoid F3H medium borderline
Bra014019.1-P Flavonoid F3H medium pass
Bra014312.1-P Flavonoid F3H low borderline
Bra014500.1-P Flavonoid F3H medium borderline
Bra014716.1-P Flavonoid F3H medium borderline
Bra014831.1-P Flavonoid F3H medium borderline
Bra015306.1-P Flavonoid F3H medium borderline
Bra015307.1-P Flavonoid F3H medium borderline
Bra015311.1-P Flavonoid F3H medium borderline
Bra015380.1-P Flavonoid F3H medium borderline
Bra015461.1-P Flavonoid F3H low borderline
Bra015513.1-P Flavonoid F3H medium borderline
Bra015514.1-P Flavonoid F3H medium borderline
Bra015515.1-P Flavonoid F3H medium borderline
Bra015675.1-P Flavonoid F3H medium borderline
Bra016708.1-P Flavonoid F3H low borderline
Bra017132.1-P Flavonoid F3H medium borderline
Bra017227.1-P Flavonoid F3H medium borderline
Bra017482.1-P Flavonoid F3H low borderline
Bra018076.1-P Flavonoid F3H medium borderline
Bra018521.1-P Flavonoid F3H low borderline
Bra018989.1-P Flavonoid F3H low borderline
Bra018990.1-P Flavonoid F3H low borderline
Bra018991.1-P Flavonoid F3H low borderline
Bra018992.1-P Flavonoid F3H low borderline
Bra019165.1-P Flavonoid F3H medium borderline
Bra019177.1-P Flavonoid F3H medium borderline
Bra019310.1-P Flavonoid F3H medium pass
Bra019350.1-P Flavonoid F3H medium borderline
Bra019485.1-P Flavonoid F3H low borderline
Bra019676.1-P Flavonoid F3H low borderline