PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

2396
Candidate Protein Records
1938
Pathway-Level Records
4856
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Bra000568.1-P Steroid CAS medium pass
Bra000727.1-P Steroid CAS medium pass
Bra000864.1-P Steroid CAS medium pass
Bra001131.1-P Steroid CAS medium pass
Bra001555.1-P Steroid CAS low borderline
Bra003630.1-P Steroid CAS medium pass
Bra004781.1-P Steroid CAS medium pass
Bra007604.1-P Steroid CAS medium pass
Bra009985.1-P Steroid CAS medium pass
Bra012955.1-P Steroid CAS low borderline
Bra013013.1-P Steroid CAS medium pass
Bra013167.1-P Steroid CAS medium pass
Bra014436.1-P Steroid CAS medium pass
Bra014529.1-P Steroid CAS medium pass
Bra014952.1-P Steroid CAS medium pass
Bra020605.1-P Steroid CAS medium pass
Bra020953.1-P Steroid CAS low borderline
Bra021082.1-P Steroid CAS medium pass
Bra025163.1-P Steroid CAS medium pass
Bra025164.1-P Steroid CAS low borderline
Bra026038.1-P Steroid CAS medium pass
Bra027098.1-P Steroid CAS low borderline
Bra032185.1-P Steroid CAS medium pass
Bra035078.1-P Steroid CAS medium pass
Bra035079.1-P Steroid CAS medium pass
Bra035120.1-P Steroid CAS medium pass
Bra035809.1-P Steroid CAS medium pass
Bra035927.1-P Steroid CAS low borderline
Bra036114.1-P Steroid CAS medium pass
Bra036115.1-P Steroid CAS medium pass
Bra036239.1-P Steroid CAS medium pass
Bra036448.1-P Steroid CAS medium pass
Bra036910.1-P Steroid CAS medium pass
Bra037620.1-P Steroid CAS medium pass
Bra037682.1-P Steroid CAS medium pass
Bra038504.1-P Steroid CAS low borderline
Bra039238.1-P Steroid CAS low borderline
Bra039708.1-P Steroid CAS medium pass
Bra039929.1-P Steroid CAS medium pass
Bra040417.1-P Steroid CAS medium pass
Bra040920.1-P Steroid CAS low borderline
Bra003129.1-P Steroid CPD/CYP90A1 medium borderline
Bra006987.1-P Steroid CPD/CYP90A1 medium borderline
Bra006988.1-P Steroid CPD/CYP90A1 medium borderline
Bra007259.1-P Steroid CPD/CYP90A1 low borderline
Bra012046.1-P Steroid CPD/CYP90A1 medium borderline
Bra013505.1-P Steroid CPD/CYP90A1 low borderline
Bra016584.1-P Steroid CPD/CYP90A1 low borderline
Bra017819.1-P Steroid CPD/CYP90A1 low borderline
Bra018051.1-P Steroid CPD/CYP90A1 low borderline