PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

2396
Candidate Protein Records
1938
Pathway-Level Records
4856
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Bra019551.1-P Steroid CPD/CYP90A1 low borderline
Bra025192.1-P Steroid CPD/CYP90A1 medium borderline
Bra025289.1-P Steroid CPD/CYP90A1 low borderline
Bra025944.1-P Steroid CPD/CYP90A1 low borderline
Bra027898.1-P Steroid CPD/CYP90A1 medium borderline
Bra027899.1-P Steroid CPD/CYP90A1 medium borderline
Bra033621.1-P Steroid CPD/CYP90A1 low borderline
Bra035844.1-P Steroid CPD/CYP90A1 low borderline
Bra036345.1-P Steroid CPD/CYP90A1 medium borderline
Bra039328.1-P Steroid CPD/CYP90A1 medium borderline
Bra000625.1-P Steroid CPI1 high pass
Bra007824.1-P Steroid CPI1 high pass
Bra001329.1-P Steroid CYP51G1 medium borderline
Bra001799.1-P Steroid CYP51G1 low borderline
Bra011671.1-P Steroid CYP51G1 medium borderline
Bra012514.1-P Steroid CYP51G1 medium borderline
Bra013634.1-P Steroid CYP51G1 medium borderline
Bra016820.1-P Steroid CYP51G1 medium borderline
Bra016822.1-P Steroid CYP51G1 medium pass
Bra017752.1-P Steroid CYP51G1 medium borderline
Bra018069.1-P Steroid CYP51G1 medium borderline
Bra019366.1-P Steroid CYP51G1 medium borderline
Bra019538.1-P Steroid CYP51G1 medium borderline
Bra019839.1-P Steroid CYP51G1 medium borderline
Bra020836.1-P Steroid CYP51G1 medium borderline
Bra021490.1-P Steroid CYP51G1 medium borderline
Bra022813.1-P Steroid CYP51G1 medium borderline
Bra024479.1-P Steroid CYP51G1 medium borderline
Bra029893.1-P Steroid CYP51G1 medium borderline
Bra029898.1-P Steroid CYP51G1 medium borderline
Bra030126.1-P Steroid CYP51G1 medium borderline
Bra033594.1-P Steroid CYP51G1 medium borderline
Bra001741.1-P Steroid CYP90D1 medium borderline
Bra004921.1-P Steroid CYP90D1 low borderline
Bra005863.1-P Steroid CYP90D1 medium borderline
Bra007988.1-P Steroid CYP90D1 low borderline
Bra009820.1-P Steroid CYP90D1 low borderline
Bra009868.1-P Steroid CYP90D1 low borderline
Bra010214.1-P Steroid CYP90D1 low borderline
Bra012551.1-P Steroid CYP90D1 medium borderline
Bra013130.1-P Steroid CYP90D1 low borderline
Bra013386.1-P Steroid CYP90D1 medium borderline
Bra013449.1-P Steroid CYP90D1 low borderline
Bra014953.1-P Steroid CYP90D1 low borderline
Bra016499.1-P Steroid CYP90D1 medium borderline
Bra020467.1-P Steroid CYP90D1 low borderline
Bra021482.1-P Steroid CYP90D1 low borderline
Bra021505.1-P Steroid CYP90D1 medium borderline
Bra022407.1-P Steroid CYP90D1 medium borderline
Bra023809.1-P Steroid CYP90D1 low borderline