PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

2396
Candidate Protein Records
1938
Pathway-Level Records
4856
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Bra025191.1-P Steroid CYP90D1 low borderline
Bra025280.1-P Steroid CYP90D1 low borderline
Bra025281.1-P Steroid CYP90D1 low borderline
Bra027405.1-P Steroid CYP90D1 medium borderline
Bra027602.1-P Steroid CYP90D1 medium borderline
Bra028714.1-P Steroid CYP90D1 low borderline
Bra028715.1-P Steroid CYP90D1 low borderline
Bra028751.1-P Steroid CYP90D1 medium borderline
Bra032183.1-P Steroid CYP90D1 medium borderline
Bra032184.1-P Steroid CYP90D1 medium borderline
Bra034941.1-P Steroid CYP90D1 low borderline
Bra035812.1-P Steroid CYP90D1 low borderline
Bra038092.1-P Steroid CYP90D1 medium borderline
Bra038167.1-P Steroid CYP90D1 low borderline
Bra039188.1-P Steroid CYP90D1 low borderline
Bra039239.1-P Steroid CYP90D1 low borderline
Bra007154.1-P Steroid DET2 low borderline
Bra008106.1-P Steroid DET2 low borderline
Bra017142.1-P Steroid DET2 medium pass
Bra025926.1-P Steroid DET2 low borderline
Bra018838.1-P Steroid DWF1 medium pass
Bra022459.1-P Steroid DWF1 medium pass
Bra038233.1-P Steroid DWF1 medium pass
Bra000390.1-P Steroid DWF4/CYP90B1 low borderline
Bra000391.1-P Steroid DWF4/CYP90B1 low borderline
Bra000572.1-P Steroid DWF4/CYP90B1 low borderline
Bra001560.1-P Steroid DWF4/CYP90B1 low borderline
Bra001562.1-P Steroid DWF4/CYP90B1 low borderline
Bra001563.1-P Steroid DWF4/CYP90B1 low borderline
Bra001564.1-P Steroid DWF4/CYP90B1 low borderline
Bra002747.1-P Steroid DWF4/CYP90B1 low borderline
Bra003019.1-P Steroid DWF4/CYP90B1 low borderline
Bra003246.1-P Steroid DWF4/CYP90B1 low borderline
Bra003247.1-P Steroid DWF4/CYP90B1 low borderline
Bra003909.1-P Steroid DWF4/CYP90B1 low borderline
Bra004386.1-P Steroid DWF4/CYP90B1 low borderline
Bra004491.1-P Steroid DWF4/CYP90B1 low borderline
Bra004918.1-P Steroid DWF4/CYP90B1 low borderline
Bra004923.1-P Steroid DWF4/CYP90B1 low borderline
Bra005811.1-P Steroid DWF4/CYP90B1 medium borderline
Bra005843.1-P Steroid DWF4/CYP90B1 medium borderline
Bra006829.1-P Steroid DWF4/CYP90B1 low borderline
Bra006830.1-P Steroid DWF4/CYP90B1 low borderline
Bra007571.1-P Steroid DWF4/CYP90B1 low borderline
Bra008760.1-P Steroid DWF4/CYP90B1 medium borderline
Bra009019.1-P Steroid DWF4/CYP90B1 low borderline
Bra009020.1-P Steroid DWF4/CYP90B1 low borderline
Bra009126.1-P Steroid DWF4/CYP90B1 medium borderline
Bra009312.1-P Steroid DWF4/CYP90B1 low borderline
Bra009437.1-P Steroid DWF4/CYP90B1 medium borderline