PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

2396
Candidate Protein Records
1938
Pathway-Level Records
4856
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Bra039328.1-P Phenylpropanoid C3'H/CYP98A medium borderline
Bra039329.1-P Phenylpropanoid C3'H/CYP98A medium borderline
Bra039330.1-P Phenylpropanoid C3'H/CYP98A medium borderline
Bra039495.1-P Phenylpropanoid C3'H/CYP98A high pass
Bra039554.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra039930.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra039931.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra040552.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra040720.1-P Phenylpropanoid C3'H/CYP98A medium borderline
Bra040762.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra040819.1-P Phenylpropanoid C3'H/CYP98A medium borderline
Bra040821.1-P Phenylpropanoid C3'H/CYP98A medium borderline
Bra040985.1-P Phenylpropanoid C3'H/CYP98A low borderline
Bra000843.1-P Phenylpropanoid C4H/CYP73A low borderline
Bra005420.1-P Phenylpropanoid C4H/CYP73A low borderline
Bra012517.1-P Phenylpropanoid C4H/CYP73A medium borderline
Bra017871.1-P Phenylpropanoid C4H/CYP73A medium borderline
Bra000568.1-P Phenylpropanoid CAD low borderline
Bra000727.1-P Phenylpropanoid CAD medium pass
Bra000864.1-P Phenylpropanoid CAD low borderline
Bra001207.1-P Phenylpropanoid CAD medium pass
Bra001555.1-P Phenylpropanoid CAD low borderline
Bra002236.1-P Phenylpropanoid CAD medium borderline
Bra003690.1-P Phenylpropanoid CAD low borderline
Bra010185.1-P Phenylpropanoid CAD low borderline
Bra010535.1-P Phenylpropanoid CAD medium borderline
Bra010625.1-P Phenylpropanoid CAD medium pass
Bra010626.1-P Phenylpropanoid CAD medium pass
Bra010627.1-P Phenylpropanoid CAD medium pass
Bra011510.1-P Phenylpropanoid CAD medium pass
Bra011798.1-P Phenylpropanoid CAD medium pass
Bra011799.1-P Phenylpropanoid CAD medium pass
Bra014263.1-P Phenylpropanoid CAD medium borderline
Bra015693.1-P Phenylpropanoid CAD low borderline
Bra016041.1-P Phenylpropanoid CAD medium pass
Bra017639.1-P Phenylpropanoid CAD medium pass
Bra019062.1-P Phenylpropanoid CAD medium borderline
Bra020019.1-P Phenylpropanoid CAD medium borderline
Bra020020.1-P Phenylpropanoid CAD medium borderline
Bra020021.1-P Phenylpropanoid CAD medium borderline
Bra020921.1-P Phenylpropanoid CAD low borderline
Bra021082.1-P Phenylpropanoid CAD low borderline
Bra021318.1-P Phenylpropanoid CAD medium borderline
Bra022425.1-P Phenylpropanoid CAD medium pass
Bra023231.1-P Phenylpropanoid CAD medium borderline
Bra023290.1-P Phenylpropanoid CAD low borderline
Bra024616.1-P Phenylpropanoid CAD low borderline
Bra025163.1-P Phenylpropanoid CAD low borderline
Bra025164.1-P Phenylpropanoid CAD low borderline
Bra027098.1-P Phenylpropanoid CAD low borderline