PlantSME Plant secondary metabolism enzyme database

Catharanthus roseus (catharanthus_roseus)

Imported from atlas release summary for Catharanthus roseus.

1387
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.18% Alkaloid pathway 22.49% Phenylpropanoid pathway 21.05% Flavonoid pathway 13.7% Rosmarinic acid pathway 10.6% Steroid pathway 4.97%
Family Distribution
C4H 6.8% C3'H/CYP98A 5.66% BAHD 5.27% UGT 4.15% 7DLGT 3.93% UFGT 3.9% IFS 3.6% CYP76 3.29%
Other Families 63.41%
More Families (94)
T3O 117 3.26% 4CL 105 2.93% POD 104 2.9% F3H 100 2.79% F3'H/CYP75B 85 2.37% CYP71 79 2.2% NMT 78 2.17% CAD 74 2.06% BR6OX2/CYP85A2 74 2.06% DWF4/CYP90B1 73 2.03% STR 62 1.73% GS 60 1.67% H6H 58 1.62% CODM/T6ODM 53 1.48% TAT 47 1.31% CAS 44 1.23% BBE 43 1.2% COMT 43 1.2% CSE 41 1.14% LAC 37 1.03% 16OMT 36 1.0% SMT1/SMT2/SMT3 36 1.0% CYP90D1 36 1.0% IFR 33 0.92% HCT 33 0.92% IO 32 0.89% T16H 31 0.86% SGD 31 0.86% SLS 31 0.86% TPS 31 0.86% F5H/CYP84A 30 0.84% TRI/TRII 28 0.78% GES 27 0.75% CYP51G1 26 0.72% G8O/G8H 25 0.7% PYKS 24 0.67% 8HGO 21 0.59% PMT 20 0.56% F3'5'H/CYP75A 20 0.56% RAS 20 0.56% NCS 17 0.47% FNS 17 0.47% ANR 16 0.45% CCR 15 0.42% CPD/CYP90A1 14 0.39% GGPPS 14 0.39% FPPS 13 0.36% 7DLH 12 0.33% ANS/LDOX 12 0.33% DFR 12 0.33% AACT 11 0.31% COR 10 0.28% BR6OX1/CYP85A1 10 0.28% PAL 9 0.25% ROT3/CYP90C1 9 0.25% LAMT 8 0.22% CNMT 7 0.2% CYP719 7 0.2% ISY 7 0.2% CPR 7 0.2% HPPR 7 0.2% SQS/FDFT1 7 0.2% CHS 6 0.17% DET2 6 0.17% CHI 5 0.14% CCoAOMT 5 0.14% MVK 5 0.14% CYP80B1 4 0.11% CYP80F1 4 0.11% TYDC_DDC 4 0.11% DXS 4 0.11% IDI 4 0.11% MPO 3 0.08% SQE 3 0.08% SMO1/SMO2 3 0.08% MVD 3 0.08% HMGR 3 0.08% TDC 2 0.06% FLS 2 0.06% FK 2 0.06% DWF7 2 0.06% DWF1 2 0.06% CMK/IspE 2 0.06% MCT/IspD 2 0.06% ADC 1 0.03% DWF5 1 0.03% CPI1 1 0.03% HYD1 1 0.03% HDR/IspH 1 0.03% HMGS 1 0.03% MDS/IspF 1 0.03% HDS/IspG 1 0.03% PMK 1 0.03% DXR 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 377 21 BAHD (138) View species results
Alkaloid pathway 312 21 7DLGT (59) View species results
Phenylpropanoid pathway 292 12 POD (92) View species results
Flavonoid pathway 190 13 UFGT (133) View species results
Rosmarinic acid pathway 147 7 C4H (60) View species results
Steroid pathway 69 12 CAS (35) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1413 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 242 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLH
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Gene Pathway Family Confidence Status Best Target
catharanthus_roseus_CRO_T001278 Alkaloid 7DLH medium borderline 7DLH__00001__sp_U5NE19_7DLH_CATRO
catharanthus_roseus_CRO_T001339 Alkaloid 7DLH medium borderline 7DLH__00001__sp_U5NE19_7DLH_CATRO
catharanthus_roseus_CRO_T004887 Alkaloid 7DLH medium borderline 7DLH__00001__sp_U5NE19_7DLH_CATRO
catharanthus_roseus_CRO_T004888 Alkaloid 7DLH medium borderline 7DLH__00001__sp_U5NE19_7DLH_CATRO
catharanthus_roseus_CRO_T005949 Alkaloid 7DLH medium borderline 7DLH__00001__sp_U5NE19_7DLH_CATRO
catharanthus_roseus_CRO_T008243 Alkaloid 7DLH medium borderline 7DLH__00001__sp_U5NE19_7DLH_CATRO
catharanthus_roseus_CRO_T009038 Alkaloid 7DLH medium borderline 7DLH__00001__sp_U5NE19_7DLH_CATRO
catharanthus_roseus_CRO_T009557 Alkaloid 7DLH medium borderline 7DLH__00001__sp_U5NE19_7DLH_CATRO
catharanthus_roseus_CRO_T014616 Alkaloid 7DLH medium borderline 7DLH__00001__sp_U5NE19_7DLH_CATRO
catharanthus_roseus_CRO_T014805 Alkaloid 7DLH medium borderline 7DLH__00001__sp_U5NE19_7DLH_CATRO
catharanthus_roseus_CRO_T017181 Alkaloid 7DLH medium borderline 7DLH__00001__sp_U5NE19_7DLH_CATRO
catharanthus_roseus_CRO_T021348 Alkaloid 7DLH medium borderline 7DLH__00001__sp_U5NE19_7DLH_CATRO