Catharanthus roseus (catharanthus_roseus)
Imported from atlas release summary for Catharanthus roseus.
1387
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1387
Candidate Genes
C4H
6.8%
C3'H/CYP98A
5.66%
BAHD
5.27%
UGT
4.15%
7DLGT
3.93%
UFGT
3.9%
IFS
3.6%
CYP76
3.29%
Other Families
63.41%
More Families (94)
T3O
117
3.26%
4CL
105
2.93%
POD
104
2.9%
F3H
100
2.79%
F3'H/CYP75B
85
2.37%
CYP71
79
2.2%
NMT
78
2.17%
CAD
74
2.06%
BR6OX2/CYP85A2
74
2.06%
DWF4/CYP90B1
73
2.03%
STR
62
1.73%
GS
60
1.67%
H6H
58
1.62%
CODM/T6ODM
53
1.48%
TAT
47
1.31%
CAS
44
1.23%
BBE
43
1.2%
COMT
43
1.2%
CSE
41
1.14%
LAC
37
1.03%
16OMT
36
1.0%
SMT1/SMT2/SMT3
36
1.0%
CYP90D1
36
1.0%
IFR
33
0.92%
HCT
33
0.92%
IO
32
0.89%
T16H
31
0.86%
SGD
31
0.86%
SLS
31
0.86%
TPS
31
0.86%
F5H/CYP84A
30
0.84%
TRI/TRII
28
0.78%
GES
27
0.75%
CYP51G1
26
0.72%
G8O/G8H
25
0.7%
PYKS
24
0.67%
8HGO
21
0.59%
PMT
20
0.56%
F3'5'H/CYP75A
20
0.56%
RAS
20
0.56%
NCS
17
0.47%
FNS
17
0.47%
ANR
16
0.45%
CCR
15
0.42%
CPD/CYP90A1
14
0.39%
GGPPS
14
0.39%
FPPS
13
0.36%
7DLH
12
0.33%
ANS/LDOX
12
0.33%
DFR
12
0.33%
AACT
11
0.31%
COR
10
0.28%
BR6OX1/CYP85A1
10
0.28%
PAL
9
0.25%
ROT3/CYP90C1
9
0.25%
LAMT
8
0.22%
CNMT
7
0.2%
CYP719
7
0.2%
ISY
7
0.2%
CPR
7
0.2%
HPPR
7
0.2%
SQS/FDFT1
7
0.2%
CHS
6
0.17%
DET2
6
0.17%
CHI
5
0.14%
CCoAOMT
5
0.14%
MVK
5
0.14%
CYP80B1
4
0.11%
CYP80F1
4
0.11%
TYDC_DDC
4
0.11%
DXS
4
0.11%
IDI
4
0.11%
MPO
3
0.08%
SQE
3
0.08%
SMO1/SMO2
3
0.08%
MVD
3
0.08%
HMGR
3
0.08%
TDC
2
0.06%
FLS
2
0.06%
FK
2
0.06%
DWF7
2
0.06%
DWF1
2
0.06%
CMK/IspE
2
0.06%
MCT/IspD
2
0.06%
ADC
1
0.03%
DWF5
1
0.03%
CPI1
1
0.03%
HYD1
1
0.03%
HDR/IspH
1
0.03%
HMGS
1
0.03%
MDS/IspF
1
0.03%
HDS/IspG
1
0.03%
PMK
1
0.03%
DXR
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 377 | 21 | BAHD (138) | View species results |
| Alkaloid pathway | 312 | 21 | 7DLGT (59) | View species results |
| Phenylpropanoid pathway | 292 | 12 | POD (92) | View species results |
| Flavonoid pathway | 190 | 13 | UFGT (133) | View species results |
| Rosmarinic acid pathway | 147 | 7 | C4H (60) | View species results |
| Steroid pathway | 69 | 12 | CAS (35) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1413 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 242 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: ANS/LDOX
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| catharanthus_roseus_CRO_T000105 | Flavonoid | ANS/LDOX | medium | borderline | ANS_LDOX__00004__sp_O80449_JOX4_ARATH |
| catharanthus_roseus_CRO_T004639 | Flavonoid | ANS/LDOX | low | borderline | ANS_LDOX__00001__sp_A0A2R6PI27_LDOX_ACTCC |
| catharanthus_roseus_CRO_T006555 | Flavonoid | ANS/LDOX | medium | pass | ANS_LDOX__00005__sp_Q96323_LDOX_ARATH |
| catharanthus_roseus_CRO_T013966 | Flavonoid | ANS/LDOX | medium | borderline | ANS_LDOX__00004__sp_O80449_JOX4_ARATH |
| catharanthus_roseus_CRO_T014647 | Flavonoid | ANS/LDOX | medium | borderline | ANS_LDOX__00004__sp_O80449_JOX4_ARATH |
| catharanthus_roseus_CRO_T016930 | Flavonoid | ANS/LDOX | medium | borderline | ANS_LDOX__00004__sp_O80449_JOX4_ARATH |
| catharanthus_roseus_CRO_T019224 | Flavonoid | ANS/LDOX | medium | pass | ANS_LDOX__00004__sp_O80449_JOX4_ARATH |
| catharanthus_roseus_CRO_T023876 | Flavonoid | ANS/LDOX | medium | borderline | ANS_LDOX__00004__sp_O80449_JOX4_ARATH |
| catharanthus_roseus_CRO_T024873 | Flavonoid | ANS/LDOX | low | borderline | ANS_LDOX__00004__sp_O80449_JOX4_ARATH |
| catharanthus_roseus_CRO_T025622 | Flavonoid | ANS/LDOX | medium | borderline | ANS_LDOX__00005__sp_Q96323_LDOX_ARATH |
| catharanthus_roseus_CRO_T028411 | Flavonoid | ANS/LDOX | medium | pass | ANS_LDOX__00004__sp_O80449_JOX4_ARATH |
| catharanthus_roseus_CRO_T032883 | Flavonoid | ANS/LDOX | medium | pass | ANS_LDOX__00001__sp_A0A2R6PI27_LDOX_ACTCC |