Catharanthus roseus (catharanthus_roseus)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Terpenoid pathway 27.18% Alkaloid pathway 22.49% Phenylpropanoid pathway 21.05% Flavonoid pathway 13.7% Rosmarinic acid pathway 10.6% Steroid pathway 4.97%

Family Distribution

1387 Candidate Genes

C4H 6.8% C3'H/CYP98A 5.66% BAHD 5.27% UGT 4.15% 7DLGT 3.93% UFGT 3.9% IFS 3.6% CYP76 3.29%

Other Families 63.41%

More Families (94)

T3O 117 3.26% 4CL 105 2.93% POD 104 2.9% F3H 100 2.79% F3'H/CYP75B 85 2.37% CYP71 79 2.2% NMT 78 2.17% CAD 74 2.06% BR6OX2/CYP85A2 74 2.06% DWF4/CYP90B1 73 2.03% STR 62 1.73% GS 60 1.67% H6H 58 1.62% CODM/T6ODM 53 1.48% TAT 47 1.31% CAS 44 1.23% BBE 43 1.2% COMT 43 1.2% CSE 41 1.14% LAC 37 1.03% 16OMT 36 1.0% SMT1/SMT2/SMT3 36 1.0% CYP90D1 36 1.0% IFR 33 0.92% HCT 33 0.92% IO 32 0.89% T16H 31 0.86% SGD 31 0.86% SLS 31 0.86% TPS 31 0.86% F5H/CYP84A 30 0.84% TRI/TRII 28 0.78% GES 27 0.75% CYP51G1 26 0.72% G8O/G8H 25 0.7% PYKS 24 0.67% 8HGO 21 0.59% PMT 20 0.56% F3'5'H/CYP75A 20 0.56% RAS 20 0.56% NCS 17 0.47% FNS 17 0.47% ANR 16 0.45% CCR 15 0.42% CPD/CYP90A1 14 0.39% GGPPS 14 0.39% FPPS 13 0.36% 7DLH 12 0.33% ANS/LDOX 12 0.33% DFR 12 0.33% AACT 11 0.31% COR 10 0.28% BR6OX1/CYP85A1 10 0.28% PAL 9 0.25% ROT3/CYP90C1 9 0.25% LAMT 8 0.22% CNMT 7 0.2% CYP719 7 0.2% ISY 7 0.2% CPR 7 0.2% HPPR 7 0.2% SQS/FDFT1 7 0.2% CHS 6 0.17% DET2 6 0.17% CHI 5 0.14% CCoAOMT 5 0.14% MVK 5 0.14% CYP80B1 4 0.11% CYP80F1 4 0.11% TYDC_DDC 4 0.11% DXS 4 0.11% IDI 4 0.11% MPO 3 0.08% SQE 3 0.08% SMO1/SMO2 3 0.08% MVD 3 0.08% HMGR 3 0.08% TDC 2 0.06% FLS 2 0.06% FK 2 0.06% DWF7 2 0.06% DWF1 2 0.06% CMK/IspE 2 0.06% MCT/IspD 2 0.06% ADC 1 0.03% DWF5 1 0.03% CPI1 1 0.03% HYD1 1 0.03% HDR/IspH 1 0.03% HMGS 1 0.03% MDS/IspF 1 0.03% HDS/IspG 1 0.03% PMK 1 0.03% DXR 1 0.03%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Terpenoid pathway	377	21	BAHD (138)	View species results
Alkaloid pathway	312	21	7DLGT (59)	View species results
Phenylpropanoid pathway	292	12	POD (92)	View species results
Flavonoid pathway	190	13	UFGT (133)	View species results
Rosmarinic acid pathway	147	7	C4H (60)	View species results
Steroid pathway	69	12	CAS (35)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	24	1413	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	242	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: NMT

Gene	Pathway	Family	Confidence	Status	Best Target
catharanthus_roseus_CRO_T023738	Alkaloid	NMT	low	borderline	NMT__00048__sp_Q8W595_SUVR4_ARATH
catharanthus_roseus_CRO_T024056	Alkaloid	NMT	medium	borderline	NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
catharanthus_roseus_CRO_T024782	Alkaloid	NMT	medium	borderline	NMT__00059__sp_Q9M571_PEAMT_SPIOL
catharanthus_roseus_CRO_T025089	Alkaloid	NMT	medium	pass	NMT__00017__sp_F4K1J4_ATXR7_ARATH
catharanthus_roseus_CRO_T025098	Alkaloid	NMT	medium	borderline	NMT__00043__sp_Q8H0D2_DXMT1_COFAR
catharanthus_roseus_CRO_T025099	Alkaloid	NMT	medium	borderline	NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
catharanthus_roseus_CRO_T025100	Alkaloid	NMT	medium	borderline	NMT__00043__sp_Q8H0D2_DXMT1_COFAR
catharanthus_roseus_CRO_T025792	Alkaloid	NMT	low	borderline	NMT__00023__sp_O82210_ANM12_ARATH
catharanthus_roseus_CRO_T026496	Alkaloid	NMT	medium	borderline	NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
catharanthus_roseus_CRO_T026564	Alkaloid	NMT	medium	borderline	NMT__00070__sp_W5U2K2_NMT_CATRO
catharanthus_roseus_CRO_T026755	Alkaloid	NMT	medium	pass	NMT__00016__sp_F4JNX3_CMKMT_ARATH
catharanthus_roseus_CRO_T027301	Alkaloid	NMT	medium	pass	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
catharanthus_roseus_CRO_T028181	Alkaloid	NMT	low	borderline	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
catharanthus_roseus_CRO_T028476	Alkaloid	NMT	medium	pass	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
catharanthus_roseus_CRO_T028931	Alkaloid	NMT	low	borderline	NMT__00034__sp_Q5VN06_CLF_ORYSJ
catharanthus_roseus_CRO_T028941	Alkaloid	NMT	medium	pass	NMT__00067__sp_Q9T0G7_SUVH9_ARATH
catharanthus_roseus_CRO_T029290	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
catharanthus_roseus_CRO_T029303	Alkaloid	NMT	medium	borderline	NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
catharanthus_roseus_CRO_T029821	Alkaloid	NMT	medium	pass	NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
catharanthus_roseus_CRO_T029822	Alkaloid	NMT	medium	pass	NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
catharanthus_roseus_CRO_T030243	Alkaloid	NMT	medium	borderline	NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
catharanthus_roseus_CRO_T030997	Alkaloid	NMT	medium	pass	NMT__00023__sp_O82210_ANM12_ARATH
catharanthus_roseus_CRO_T031484	Alkaloid	NMT	medium	pass	NMT__00025__sp_P93831_CLF_ARATH
catharanthus_roseus_CRO_T032067	Alkaloid	NMT	medium	borderline	NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
catharanthus_roseus_CRO_T032183	Alkaloid	NMT	low	borderline	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
catharanthus_roseus_CRO_T033266	Alkaloid	NMT	medium	borderline	NMT__00070__sp_W5U2K2_NMT_CATRO
catharanthus_roseus_CRO_T033461	Alkaloid	NMT	medium	pass	NMT__00042__sp_Q8GZB6_SUVH4_ARATH
catharanthus_roseus_CRO_T033555	Alkaloid	NMT	medium	pass	NMT__00069__sp_Q9ZSM8_EZA1_ARATH