Catharanthus roseus (catharanthus_roseus)
Imported from atlas release summary for Catharanthus roseus.
1677
Candidate Protein Records
1387
Pathway-Level Records
3588
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
3588
Family-Level Calls
C4H
6.8%
C3'H/CYP98A
5.66%
BAHD
5.27%
UGT
4.15%
7DLGT
3.93%
UFGT
3.9%
IFS
3.6%
CYP76
3.29%
Other Families
63.41%
More Families (94)
T3O
117
3.26%
4CL
105
2.93%
POD
104
2.9%
F3H
100
2.79%
F3'H/CYP75B
85
2.37%
CYP71
79
2.2%
NMT
78
2.17%
CAD
74
2.06%
BR6OX2/CYP85A2
74
2.06%
DWF4/CYP90B1
73
2.03%
STR
62
1.73%
GS
60
1.67%
H6H
58
1.62%
CODM/T6ODM
53
1.48%
TAT
47
1.31%
CAS
44
1.23%
BBE
43
1.2%
COMT
43
1.2%
CSE
41
1.14%
LAC
37
1.03%
16OMT
36
1.0%
SMT1/SMT2/SMT3
36
1.0%
CYP90D1
36
1.0%
IFR
33
0.92%
HCT
33
0.92%
IO
32
0.89%
T16H
31
0.86%
SGD
31
0.86%
SLS
31
0.86%
TPS
31
0.86%
F5H/CYP84A
30
0.84%
TRI/TRII
28
0.78%
GES
27
0.75%
CYP51G1
26
0.72%
G8O/G8H
25
0.7%
PYKS
24
0.67%
8HGO
21
0.59%
PMT
20
0.56%
F3'5'H/CYP75A
20
0.56%
RAS
20
0.56%
NCS
17
0.47%
FNS
17
0.47%
ANR
16
0.45%
CCR
15
0.42%
CPD/CYP90A1
14
0.39%
GGPPS
14
0.39%
FPPS
13
0.36%
7DLH
12
0.33%
ANS/LDOX
12
0.33%
DFR
12
0.33%
AACT
11
0.31%
COR
10
0.28%
BR6OX1/CYP85A1
10
0.28%
PAL
9
0.25%
ROT3/CYP90C1
9
0.25%
LAMT
8
0.22%
CNMT
7
0.2%
CYP719
7
0.2%
ISY
7
0.2%
CPR
7
0.2%
HPPR
7
0.2%
SQS/FDFT1
7
0.2%
CHS
6
0.17%
DET2
6
0.17%
CHI
5
0.14%
CCoAOMT
5
0.14%
MVK
5
0.14%
CYP80B1
4
0.11%
CYP80F1
4
0.11%
TYDC_DDC
4
0.11%
DXS
4
0.11%
IDI
4
0.11%
MPO
3
0.08%
SQE
3
0.08%
SMO1/SMO2
3
0.08%
MVD
3
0.08%
HMGR
3
0.08%
TDC
2
0.06%
FLS
2
0.06%
FK
2
0.06%
DWF7
2
0.06%
DWF1
2
0.06%
CMK/IspE
2
0.06%
MCT/IspD
2
0.06%
ADC
1
0.03%
DWF5
1
0.03%
CPI1
1
0.03%
HYD1
1
0.03%
HDR/IspH
1
0.03%
HMGS
1
0.03%
MDS/IspF
1
0.03%
HDS/IspG
1
0.03%
PMK
1
0.03%
DXR
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 377 | 21 | BAHD (138) | View species results |
| Alkaloid pathway | 312 | 21 | 7DLGT (59) | View species results |
| Phenylpropanoid pathway | 292 | 12 | POD (92) | View species results |
| Flavonoid pathway | 190 | 13 | UFGT (133) | View species results |
| Rosmarinic acid pathway | 147 | 7 | C4H (60) | View species results |
| Steroid pathway | 69 | 12 | CAS (35) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1413 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 242 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| catharanthus_roseus_CRO_T020212 | Alkaloid | STR | low | borderline |
| catharanthus_roseus_CRO_T020498 | Alkaloid | STR | low | borderline |
| catharanthus_roseus_CRO_T020680 | Alkaloid | STR | low | borderline |
| catharanthus_roseus_CRO_T021146 | Alkaloid | STR | low | borderline |
| catharanthus_roseus_CRO_T021502 | Alkaloid | STR | medium | pass |
| catharanthus_roseus_CRO_T022716 | Alkaloid | STR | low | borderline |
| catharanthus_roseus_CRO_T023685 | Alkaloid | STR | medium | pass |
| catharanthus_roseus_CRO_T024097 | Alkaloid | STR | low | borderline |
| catharanthus_roseus_CRO_T025012 | Alkaloid | STR | low | borderline |
| catharanthus_roseus_CRO_T026878 | Alkaloid | STR | low | borderline |
| catharanthus_roseus_CRO_T028330 | Alkaloid | STR | low | borderline |
| catharanthus_roseus_CRO_T029376 | Alkaloid | STR | low | borderline |
| catharanthus_roseus_CRO_T030041 | Alkaloid | STR | medium | pass |
| catharanthus_roseus_CRO_T030267 | Alkaloid | STR | low | borderline |
| catharanthus_roseus_CRO_T030291 | Alkaloid | STR | low | borderline |
| catharanthus_roseus_CRO_T030537 | Alkaloid | STR | low | borderline |
| catharanthus_roseus_CRO_T030716 | Alkaloid | STR | low | borderline |
| catharanthus_roseus_CRO_T031400 | Alkaloid | STR | low | borderline |
| catharanthus_roseus_CRO_T031594 | Alkaloid | STR | low | borderline |
| catharanthus_roseus_CRO_T031875 | Alkaloid | STR | low | borderline |
| catharanthus_roseus_CRO_T032323 | Alkaloid | STR | low | borderline |
| catharanthus_roseus_CRO_T033831 | Alkaloid | STR | medium | pass |
| catharanthus_roseus_CRO_T000351 | Alkaloid | T16H | medium | borderline |
| catharanthus_roseus_CRO_T000894 | Alkaloid | T16H | medium | borderline |
| catharanthus_roseus_CRO_T002410 | Alkaloid | T16H | medium | borderline |
| catharanthus_roseus_CRO_T002445 | Alkaloid | T16H | medium | borderline |
| catharanthus_roseus_CRO_T002452 | Alkaloid | T16H | medium | borderline |
| catharanthus_roseus_CRO_T007706 | Alkaloid | T16H | low | borderline |
| catharanthus_roseus_CRO_T009296 | Alkaloid | T16H | medium | borderline |
| catharanthus_roseus_CRO_T010261 | Alkaloid | T16H | medium | borderline |
| catharanthus_roseus_CRO_T010741 | Alkaloid | T16H | medium | borderline |
| catharanthus_roseus_CRO_T011168 | Alkaloid | T16H | medium | borderline |
| catharanthus_roseus_CRO_T011779 | Alkaloid | T16H | medium | borderline |
| catharanthus_roseus_CRO_T012317 | Alkaloid | T16H | medium | pass |
| catharanthus_roseus_CRO_T013485 | Alkaloid | T16H | medium | borderline |
| catharanthus_roseus_CRO_T013902 | Alkaloid | T16H | medium | borderline |
| catharanthus_roseus_CRO_T014272 | Alkaloid | T16H | medium | borderline |
| catharanthus_roseus_CRO_T014491 | Alkaloid | T16H | medium | borderline |
| catharanthus_roseus_CRO_T015220 | Alkaloid | T16H | medium | borderline |
| catharanthus_roseus_CRO_T018667 | Alkaloid | T16H | medium | borderline |
| catharanthus_roseus_CRO_T020258 | Alkaloid | T16H | medium | borderline |
| catharanthus_roseus_CRO_T020781 | Alkaloid | T16H | medium | borderline |
| catharanthus_roseus_CRO_T021352 | Alkaloid | T16H | medium | borderline |
| catharanthus_roseus_CRO_T022260 | Alkaloid | T16H | medium | borderline |
| catharanthus_roseus_CRO_T023624 | Alkaloid | T16H | medium | borderline |
| catharanthus_roseus_CRO_T024572 | Alkaloid | T16H | low | borderline |
| catharanthus_roseus_CRO_T026616 | Alkaloid | T16H | medium | borderline |
| catharanthus_roseus_CRO_T026877 | Alkaloid | T16H | medium | borderline |
| catharanthus_roseus_CRO_T027093 | Alkaloid | T16H | medium | borderline |
| catharanthus_roseus_CRO_T028862 | Alkaloid | T16H | medium | borderline |