PlantSME Plant secondary metabolism enzyme database

Citrus medica (citrus_medica)

Imported from atlas release summary for Citrus medica.

2210
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 678 20 BAHD (294) View species results
Alkaloid pathway 560 26 NMT (112) View species results
Phenylpropanoid pathway 422 12 POD (178) View species results
Rosmarinic acid pathway 212 7 C4H (99) View species results
Flavonoid pathway 189 9 UFGT (68) View species results
Steroid pathway 149 11 CAS (66) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2418 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 448 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
Cmedscaffold_280137040.1 Alkaloid 7DLGT low borderline
Cmedscaffold_281_10138610.1 Alkaloid 7DLGT medium pass
Cmedscaffold_281_10138620.1 Alkaloid 7DLGT medium pass
Cmedscaffold_281_10138630.1 Alkaloid 7DLGT medium pass
Cmedscaffold_281_10138640.1 Alkaloid 7DLGT low borderline
Cmedscaffold_281_10138650.1 Alkaloid 7DLGT medium pass
Cmedscaffold_2860140580.1 Alkaloid 7DLGT low borderline
Cmedscaffold_2860140590.1 Alkaloid 7DLGT low borderline
Cmedscaffold_290142400.1 Alkaloid 7DLGT low borderline
Cmedscaffold_30147240.1 Alkaloid 7DLGT low borderline
Cmedscaffold_31970156650.1 Alkaloid 7DLGT low borderline
Cmedscaffold_330162730.1 Alkaloid 7DLGT low borderline
Cmedscaffold_34670168710.1 Alkaloid 7DLGT low borderline
Cmedscaffold_350172650.1 Alkaloid 7DLGT medium pass
Cmedscaffold_350172660.1 Alkaloid 7DLGT medium pass
Cmedscaffold_350172670.1 Alkaloid 7DLGT medium pass
Cmedscaffold_35390173960.1 Alkaloid 7DLGT medium pass
Cmedscaffold_3640178530.1 Alkaloid 7DLGT low borderline
Cmedscaffold_365_20179260.1 Alkaloid 7DLGT medium pass
Cmedscaffold_3670179920.1 Alkaloid 7DLGT low borderline
Cmedscaffold_3790184690.1 Alkaloid 7DLGT low borderline
Cmedscaffold_3790184710.1 Alkaloid 7DLGT low borderline
Cmedscaffold_3790184960.1 Alkaloid 7DLGT high pass
Cmedscaffold_3790184990.1 Alkaloid 7DLGT medium pass
Cmedscaffold_3830187700.1 Alkaloid 7DLGT high pass
Cmedscaffold_3850188560.1 Alkaloid 7DLGT low borderline
Cmedscaffold_3850188900.1 Alkaloid 7DLGT low borderline
Cmedscaffold_3850188920.1 Alkaloid 7DLGT low borderline
Cmedscaffold_3850188930.1 Alkaloid 7DLGT low borderline
Cmedscaffold_3860189400.1 Alkaloid 7DLGT low borderline
Cmedscaffold_3950193410.1 Alkaloid 7DLGT medium pass
Cmedscaffold_400196030.1 Alkaloid 7DLGT low borderline
Cmedscaffold_460217780.1 Alkaloid 7DLGT medium pass
Cmedscaffold_4840224090.1 Alkaloid 7DLGT low borderline
Cmedscaffold_4840224100.1 Alkaloid 7DLGT low borderline
Cmedscaffold_4840224120.1 Alkaloid 7DLGT low borderline
Cmedscaffold_5220236710.1 Alkaloid 7DLGT low borderline
Cmedscaffold_5220236730.1 Alkaloid 7DLGT low borderline
Cmedscaffold_54840241660.1 Alkaloid 7DLGT medium pass
Cmedscaffold_630260860.1 Alkaloid 7DLGT low borderline
Cmedscaffold_6400264300.1 Alkaloid 7DLGT low borderline
Cmedscaffold_7220283040.1 Alkaloid 7DLGT medium pass
Cmedscaffold_7220283070.1 Alkaloid 7DLGT medium pass
Cmedscaffold_7270283740.1 Alkaloid 7DLGT medium pass
Cmedscaffold_7270283750.1 Alkaloid 7DLGT medium pass
Cmedscaffold_7390287010.1 Alkaloid 7DLGT low borderline
Cmedscaffold_7480288700.1 Alkaloid 7DLGT low borderline
Cmedscaffold_770293280.1 Alkaloid 7DLGT medium pass
Cmedscaffold_80298280.1 Alkaloid 7DLGT medium pass
Cmedscaffold_8150301180.1 Alkaloid 7DLGT low borderline