PlantSME Plant secondary metabolism enzyme database

Citrus medica (citrus_medica)

Imported from atlas release summary for Citrus medica.

2210
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 678 20 BAHD (294) View species results
Alkaloid pathway 560 26 NMT (112) View species results
Phenylpropanoid pathway 422 12 POD (178) View species results
Rosmarinic acid pathway 212 7 C4H (99) View species results
Flavonoid pathway 189 9 UFGT (68) View species results
Steroid pathway 149 11 CAS (66) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2418 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 448 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
Cmedscaffold_8380304550.1 Alkaloid 7DLGT medium pass
Cmedscaffold_8380304560.1 Alkaloid 7DLGT medium pass
Cmedscaffold_8380304570.1 Alkaloid 7DLGT medium pass
Cmedscaffold_90312410.1 Alkaloid 7DLGT medium pass
Cmedscaffold_9190317430.1 Alkaloid 7DLGT low borderline
Cmedscaffold_9750323660.1 Alkaloid 7DLGT low borderline
Cmedscaffold_1030004370.1 Alkaloid 7DLH medium borderline
Cmedscaffold_1160021080.1 Alkaloid 7DLH medium borderline
Cmedscaffold_13010036830.1 Alkaloid 7DLH medium borderline
Cmedscaffold_180080290.1 Alkaloid 7DLH medium borderline
Cmedscaffold_1900086840.1 Alkaloid 7DLH medium borderline
Cmedscaffold_1900086840.2 Alkaloid 7DLH medium borderline
Cmedscaffold_210100180.1 Alkaloid 7DLH medium borderline
Cmedscaffold_240115250.1 Alkaloid 7DLH medium borderline
Cmedscaffold_240115270.1 Alkaloid 7DLH medium borderline
Cmedscaffold_240115280.1 Alkaloid 7DLH medium borderline
Cmedscaffold_240115290.1 Alkaloid 7DLH medium borderline
Cmedscaffold_240115300.1 Alkaloid 7DLH medium borderline
Cmedscaffold_240115320.1 Alkaloid 7DLH medium borderline
Cmedscaffold_2460119060.1 Alkaloid 7DLH medium borderline
Cmedscaffold_2560122970.2 Alkaloid 7DLH medium borderline
Cmedscaffold_2560123010.1 Alkaloid 7DLH medium borderline
Cmedscaffold_2620127510.1 Alkaloid 7DLH medium borderline
Cmedscaffold_34_20170920.1 Alkaloid 7DLH low borderline
Cmedscaffold_370181250.1 Alkaloid 7DLH medium pass
Cmedscaffold_370181260.1 Alkaloid 7DLH medium borderline
Cmedscaffold_420203390.1 Alkaloid 7DLH medium borderline
Cmedscaffold_48890225300.2 Alkaloid 7DLH medium borderline
Cmedscaffold_56_10246950.1 Alkaloid 7DLH low borderline
Cmedscaffold_6050255640.1 Alkaloid 7DLH medium pass
Cmedscaffold_630260780.1 Alkaloid 7DLH medium borderline
Cmedscaffold_900314640.1 Alkaloid 7DLH medium borderline
Cmedscaffold_900314730.1 Alkaloid 7DLH medium borderline
Cmedscaffold_900314750.1 Alkaloid 7DLH medium borderline
Cmedscaffold_940320120.1 Alkaloid 7DLH medium borderline
Cmedscaffold_940320120.2 Alkaloid 7DLH medium borderline
Cmedscaffold_10020001710.1 Alkaloid 8HGO medium borderline
Cmedscaffold_1040006140.1 Alkaloid 8HGO medium borderline
Cmedscaffold_1040006430.1 Alkaloid 8HGO medium borderline
Cmedscaffold_1150020040.1 Alkaloid 8HGO medium borderline
Cmedscaffold_12530031710.1 Alkaloid 8HGO medium borderline
Cmedscaffold_20560097420.1 Alkaloid 8HGO medium borderline
Cmedscaffold_2290109700.1 Alkaloid 8HGO medium borderline
Cmedscaffold_2290109710.1 Alkaloid 8HGO medium pass
Cmedscaffold_2420117290.1 Alkaloid 8HGO medium borderline
Cmedscaffold_2730134060.1 Alkaloid 8HGO medium borderline
Cmedscaffold_27940136910.1 Alkaloid 8HGO medium borderline
Cmedscaffold_34_20170870.1 Alkaloid 8HGO medium borderline
Cmedscaffold_34_20170880.1 Alkaloid 8HGO medium borderline
Cmedscaffold_34_20170900.1 Alkaloid 8HGO low borderline