PlantSME Plant secondary metabolism enzyme database

Citrus medica (citrus_medica)

Imported from atlas release summary for Citrus medica.

2858
Candidate Protein Records
2210
Pathway-Level Records
5742
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 678 20 BAHD (294) View species results
Alkaloid pathway 560 26 NMT (112) View species results
Phenylpropanoid pathway 422 12 POD (178) View species results
Rosmarinic acid pathway 212 7 C4H (99) View species results
Flavonoid pathway 189 9 UFGT (68) View species results
Steroid pathway 149 11 CAS (66) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2418 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 448 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Cmedscaffold_7620291420.1 Alkaloid BBE medium borderline
Cmedscaffold_7620291430.1 Alkaloid BBE medium borderline
Cmedscaffold_7620291440.1 Alkaloid BBE medium borderline
Cmedscaffold_7620291450.1 Alkaloid BBE medium borderline
Cmedscaffold_7620291460.1 Alkaloid BBE medium borderline
Cmedscaffold_7620291470.1 Alkaloid BBE medium borderline
Cmedscaffold_7620291480.1 Alkaloid BBE medium borderline
Cmedscaffold_7620291500.1 Alkaloid BBE medium borderline
Cmedscaffold_7620291510.1 Alkaloid BBE medium borderline
Cmedscaffold_78410295320.1 Alkaloid BBE medium borderline
Cmedscaffold_80570299900.1 Alkaloid BBE medium borderline
Cmedscaffold_85950307400.1 Alkaloid BBE medium borderline
Cmedscaffold_890310820.1 Alkaloid BBE medium borderline
Cmedscaffold_9510321740.1 Alkaloid BBE medium borderline
Cmedscaffold_9510321750.1 Alkaloid BBE medium borderline
Cmedscaffold_9510321760.1 Alkaloid BBE medium borderline
Cmedscaffold_9510321760.2 Alkaloid BBE medium borderline
Cmedscaffold_96570323130.1 Alkaloid BBE medium borderline
Cmedscaffold_10230003620.1 Alkaloid CNMT low borderline
Cmedscaffold_14750051510.1 Alkaloid CNMT low borderline
Cmedscaffold_3770184320.1 Alkaloid CNMT low borderline
Cmedscaffold_3770184320.3 Alkaloid CNMT low borderline
Cmedscaffold_410200020.1 Alkaloid CNMT low borderline
Cmedscaffold_5360239900.1 Alkaloid CNMT low borderline
Cmedscaffold_620259140.1 Alkaloid CNMT low borderline
Cmedscaffold_7970297490.1 Alkaloid CNMT low borderline
Cmedscaffold_8420305350.1 Alkaloid CNMT medium pass
Cmedscaffold_90311890.1 Alkaloid CNMT low borderline
Cmedscaffold_940320450.1 Alkaloid CNMT medium borderline
Cmedscaffold_940320460.1 Alkaloid CNMT medium borderline
Cmedscaffold_100920002170.1 Alkaloid CODM/T6ODM low borderline
Cmedscaffold_1050007190.1 Alkaloid CODM/T6ODM medium borderline
Cmedscaffold_110013670.1 Alkaloid CODM/T6ODM medium borderline
Cmedscaffold_1110016080.1 Alkaloid CODM/T6ODM medium borderline
Cmedscaffold_1150019900.1 Alkaloid CODM/T6ODM medium borderline
Cmedscaffold_1190023410.1 Alkaloid CODM/T6ODM medium borderline
Cmedscaffold_1190023410.2 Alkaloid CODM/T6ODM medium borderline
Cmedscaffold_1190024170.1 Alkaloid CODM/T6ODM medium borderline
Cmedscaffold_1200026740.1 Alkaloid CODM/T6ODM medium borderline
Cmedscaffold_1200026850.1 Alkaloid CODM/T6ODM medium borderline
Cmedscaffold_12090027260.1 Alkaloid CODM/T6ODM medium borderline
Cmedscaffold_12090027270.1 Alkaloid CODM/T6ODM medium borderline
Cmedscaffold_12090027290.1 Alkaloid CODM/T6ODM medium borderline
Cmedscaffold_1300036540.1 Alkaloid CODM/T6ODM medium borderline
Cmedscaffold_1300036680.1 Alkaloid CODM/T6ODM medium borderline
Cmedscaffold_1350040300.1 Alkaloid CODM/T6ODM medium borderline
Cmedscaffold_1380043220.1 Alkaloid CODM/T6ODM medium borderline
Cmedscaffold_1460050320.1 Alkaloid CODM/T6ODM medium borderline
Cmedscaffold_1460050360.1 Alkaloid CODM/T6ODM medium borderline
Cmedscaffold_146110050780.1 Alkaloid CODM/T6ODM medium borderline