PlantSME Plant secondary metabolism enzyme database

Citrus sinensis (citrus_sinensis)

Imported from atlas release summary for Citrus sinensis.

2983
Candidate Protein Records
2333
Pathway-Level Records
5625
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 30.22% Alkaloid pathway 23.53% Phenylpropanoid pathway 20.06% Flavonoid pathway 9.94% Rosmarinic acid pathway 8.19% Steroid pathway 8.06%
Family Distribution
BAHD 6.2% 4CL 5.65% C4H 5.65% C3'H/CYP98A 4.96% NMT 3.77% POD 3.66% CYP76 3.64% UGT 3.47%
Other Families 62.99%
More Families (97)
IFS 178 3.16% 7DLGT 161 2.86% UFGT 154 2.74% T3O 152 2.7% F3H 148 2.63% STR 122 2.17% CAS 111 1.97% F3'H/CYP75B 108 1.92% CODM/T6ODM 105 1.87% DWF4/CYP90B1 94 1.67% BR6OX2/CYP85A2 92 1.64% IFR 88 1.56% CAD 87 1.55% CYP71 85 1.51% TPS 82 1.46% SMT1/SMT2/SMT3 73 1.3% COMT 72 1.28% GES 71 1.26% SGD 61 1.08% G8O/G8H 61 1.08% H6H 60 1.07% TRI/TRII 59 1.05% GS 54 0.96% CYP90D1 52 0.92% T16H 47 0.84% TAT 45 0.8% 8HGO 43 0.76% BBE 41 0.73% LAC 39 0.69% ANR 38 0.68% 16OMT 37 0.66% CSE 36 0.64% PYKS 34 0.6% CCR 34 0.6% IO 32 0.57% HCT 32 0.57% SLS 30 0.53% FNS 29 0.52% AACT 29 0.52% F5H/CYP84A 28 0.5% RAS 28 0.5% CPD/CYP90A1 27 0.48% GGPPS 27 0.48% CCoAOMT 26 0.46% CPR 26 0.46% DFR 25 0.44% PMT 24 0.43% COR 24 0.43% LAMT 24 0.43% CNMT 23 0.41% 7DLH 23 0.41% NCS 21 0.37% F3'5'H/CYP75A 21 0.37% MPO 16 0.28% ISY 16 0.28% ANS/LDOX 15 0.27% PAL 15 0.27% CYP51G1 15 0.27% SQS/FDFT1 14 0.25% MCT/IspD 14 0.25% TYDC_DDC 12 0.21% MVD 12 0.21% DXS 11 0.2% CYP719 10 0.18% CHS 10 0.18% HMGS 10 0.18% BR6OX1/CYP85A1 9 0.16% HDS/IspG 9 0.16% HDR/IspH 9 0.16% HPPR 8 0.14% ROT3/CYP90C1 8 0.14% FPPS 8 0.14% CYP80B1 7 0.12% 6OMT_4OMT_SOMT 7 0.12% DXR 7 0.12% XMT_MXMT_DXMT 6 0.11% CHI 6 0.11% SQE 6 0.11% IDI 6 0.11% ODC 5 0.09% DWF7 5 0.09% MVK 5 0.09% HYD1 4 0.07% HMGR 4 0.07% TDC 3 0.05% ADC 3 0.05% FLS 3 0.05% SMO1/SMO2 3 0.05% DWF1 3 0.05% CPI1 3 0.05% DWF5 3 0.05% MDS/IspF 3 0.05% DET2 2 0.04% CMK/IspE 2 0.04% FK 1 0.02% GPPS 1 0.02% PMK 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 705 19 BAHD (287) View species results
Alkaloid pathway 549 25 NMT (96) View species results
Phenylpropanoid pathway 468 13 POD (203) View species results
Flavonoid pathway 232 15 UFGT (132) View species results
Rosmarinic acid pathway 191 7 C4H (66) View species results
Steroid pathway 188 14 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1881 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 409 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAS
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Protein/Isoform Record Pathway Family Confidence Status Best Target
Csinscaffold034780232850.6 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Csinscaffold034780232850.7 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Csinscaffold034780232850.8 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Csinscaffold039660234480.1 Steroid CAS medium pass CAS__00014__sp_Q9SXV6_CAS1_GLYGL
Csinscaffold058980239610.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Csinscaffold070140242270.1 Steroid CAS medium pass CAS__00008__sp_Q6BE25_CAS1_CUCPE
Csinscaffold076870243850.1 Steroid CAS medium pass CAS__00002__sp_E2IUB0_CASS_KALDA
Csinscaffold094730247680.1 Steroid CAS medium pass CAS__00014__sp_Q9SXV6_CAS1_GLYGL
Csinscaffold102230249270.1 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Csinscaffold102480249330.1 Steroid CAS medium pass CAS__00004__sp_O82139_CAS1_PANGI
Csinscaffold102480249330.2 Steroid CAS medium pass CAS__00004__sp_O82139_CAS1_PANGI