Citrus sinensis (citrus_sinensis)
Imported from atlas release summary for Citrus sinensis.
2333
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2333
Candidate Genes
BAHD
6.2%
4CL
5.65%
C4H
5.65%
C3'H/CYP98A
4.96%
NMT
3.77%
POD
3.66%
CYP76
3.64%
UGT
3.47%
Other Families
62.99%
More Families (97)
IFS
178
3.16%
7DLGT
161
2.86%
UFGT
154
2.74%
T3O
152
2.7%
F3H
148
2.63%
STR
122
2.17%
CAS
111
1.97%
F3'H/CYP75B
108
1.92%
CODM/T6ODM
105
1.87%
DWF4/CYP90B1
94
1.67%
BR6OX2/CYP85A2
92
1.64%
IFR
88
1.56%
CAD
87
1.55%
CYP71
85
1.51%
TPS
82
1.46%
SMT1/SMT2/SMT3
73
1.3%
COMT
72
1.28%
GES
71
1.26%
SGD
61
1.08%
G8O/G8H
61
1.08%
H6H
60
1.07%
TRI/TRII
59
1.05%
GS
54
0.96%
CYP90D1
52
0.92%
T16H
47
0.84%
TAT
45
0.8%
8HGO
43
0.76%
BBE
41
0.73%
LAC
39
0.69%
ANR
38
0.68%
16OMT
37
0.66%
CSE
36
0.64%
PYKS
34
0.6%
CCR
34
0.6%
IO
32
0.57%
HCT
32
0.57%
SLS
30
0.53%
FNS
29
0.52%
AACT
29
0.52%
F5H/CYP84A
28
0.5%
RAS
28
0.5%
CPD/CYP90A1
27
0.48%
GGPPS
27
0.48%
CCoAOMT
26
0.46%
CPR
26
0.46%
DFR
25
0.44%
PMT
24
0.43%
COR
24
0.43%
LAMT
24
0.43%
CNMT
23
0.41%
7DLH
23
0.41%
NCS
21
0.37%
F3'5'H/CYP75A
21
0.37%
MPO
16
0.28%
ISY
16
0.28%
ANS/LDOX
15
0.27%
PAL
15
0.27%
CYP51G1
15
0.27%
SQS/FDFT1
14
0.25%
MCT/IspD
14
0.25%
TYDC_DDC
12
0.21%
MVD
12
0.21%
DXS
11
0.2%
CYP719
10
0.18%
CHS
10
0.18%
HMGS
10
0.18%
BR6OX1/CYP85A1
9
0.16%
HDS/IspG
9
0.16%
HDR/IspH
9
0.16%
HPPR
8
0.14%
ROT3/CYP90C1
8
0.14%
FPPS
8
0.14%
CYP80B1
7
0.12%
6OMT_4OMT_SOMT
7
0.12%
DXR
7
0.12%
XMT_MXMT_DXMT
6
0.11%
CHI
6
0.11%
SQE
6
0.11%
IDI
6
0.11%
ODC
5
0.09%
DWF7
5
0.09%
MVK
5
0.09%
HYD1
4
0.07%
HMGR
4
0.07%
TDC
3
0.05%
ADC
3
0.05%
FLS
3
0.05%
SMO1/SMO2
3
0.05%
DWF1
3
0.05%
CPI1
3
0.05%
DWF5
3
0.05%
MDS/IspF
3
0.05%
DET2
2
0.04%
CMK/IspE
2
0.04%
FK
1
0.02%
GPPS
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 705 | 19 | BAHD (287) | View species results |
| Alkaloid pathway | 549 | 25 | NMT (96) | View species results |
| Phenylpropanoid pathway | 468 | 13 | POD (203) | View species results |
| Flavonoid pathway | 232 | 15 | UFGT (132) | View species results |
| Rosmarinic acid pathway | 191 | 7 | C4H (66) | View species results |
| Steroid pathway | 188 | 14 | CAS (104) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1881 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 409 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UGT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Csinscaffold000010003450.1 | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| Csinscaffold000010004080.1 | Terpenoid | UGT | medium | pass | UGT__00103__sp_Q9M156_U72B1_ARATH |
| Csinscaffold000010004090.1 | Terpenoid | UGT | medium | pass | UGT__00103__sp_Q9M156_U72B1_ARATH |
| Csinscaffold000020012740.1 | Terpenoid | UGT | medium | pass | UGT__00057__sp_O81498_U72E3_ARATH |
| Csinscaffold000020016050.1 | Terpenoid | UGT | medium | pass | UGT__00047__sp_K7NBW3_74AC1_SIRGR |
| Csinscaffold000030019440.1 | Terpenoid | UGT | medium | pass | UGT__00055__sp_O48676_U74B1_ARATH |
| Csinscaffold000030021360.1 | Terpenoid | UGT | medium | pass | UGT__00017__sp_A0A224AKZ9_708G2_CITUN |
| Csinscaffold000040025150.1 | Terpenoid | UGT | medium | pass | UGT__00109__sp_Q9ZQ94_U73C5_ARATH |
| Csinscaffold000040025320.1 | Terpenoid | UGT | medium | pass | UGT__00034__sp_F8WLS6_UGT6_CATRO |
| Csinscaffold000060035260.1 | Terpenoid | UGT | medium | pass | UGT__00079__sp_Q94A84_U72E1_ARATH |
| Csinscaffold000060035270.1 | Terpenoid | UGT | medium | pass | UGT__00079__sp_Q94A84_U72E1_ARATH |
| Csinscaffold000060035280.1 | Terpenoid | UGT | medium | pass | UGT__00079__sp_Q94A84_U72E1_ARATH |
| Csinscaffold000070036290.1 | Terpenoid | UGT | medium | pass | UGT__00035__sp_I1KEV6_FG3H_SOYBN |
| Csinscaffold000070036300.1 | Terpenoid | UGT | medium | pass | UGT__00035__sp_I1KEV6_FG3H_SOYBN |
| Csinscaffold000080042000.1 | Terpenoid | UGT | medium | pass | UGT__00014__sp_A0A172J2G3_UGT43_PUEML |
| Csinscaffold000080042670.1 | Terpenoid | UGT | medium | pass | UGT__00014__sp_A0A172J2G3_UGT43_PUEML |
| Csinscaffold000140058450.1 | Terpenoid | UGT | medium | pass | UGT__00081__sp_Q9C768_U76B1_ARATH |
| Csinscaffold000150062660.1 | Terpenoid | UGT | medium | pass | UGT__00012__sp_A0A0M4KE44_CGT_MANIN |
| Csinscaffold000150062900.1 | Terpenoid | UGT | low | borderline | UGT__00015__sp_A0A193AU77_GGT24_PUNGR |
| Csinscaffold000150062910.1 | Terpenoid | UGT | medium | pass | UGT__00105__sp_Q9SK82_U85A1_ARATH |
| Csinscaffold000150062920.1 | Terpenoid | UGT | medium | pass | UGT__00032__sp_F8WKW1_UGT2_GARJA |
| Csinscaffold000190071990.1 | Terpenoid | UGT | medium | pass | UGT__00102__sp_Q9LZD8_U89A2_ARATH |
| Csinscaffold000190072000.1 | Terpenoid | UGT | medium | pass | UGT__00102__sp_Q9LZD8_U89A2_ARATH |
| Csinscaffold000200074490.1 | Terpenoid | UGT | medium | pass | UGT__00055__sp_O48676_U74B1_ARATH |
| Csinscaffold000210076610.1 | Terpenoid | UGT | medium | pass | UGT__00081__sp_Q9C768_U76B1_ARATH |
| Csinscaffold000210076620.1 | Terpenoid | UGT | medium | pass | UGT__00081__sp_Q9C768_U76B1_ARATH |
| Csinscaffold000210076620.2 | Terpenoid | UGT | medium | pass | UGT__00081__sp_Q9C768_U76B1_ARATH |
| Csinscaffold000210076630.1 | Terpenoid | UGT | medium | pass | UGT__00115__sp_U3U992_UGT8_CATRO |
| Csinscaffold000210076640.1 | Terpenoid | UGT | medium | pass | UGT__00115__sp_U3U992_UGT8_CATRO |
| Csinscaffold000210076650.1 | Terpenoid | UGT | medium | pass | UGT__00115__sp_U3U992_UGT8_CATRO |
| Csinscaffold000210076650.2 | Terpenoid | UGT | medium | pass | UGT__00115__sp_U3U992_UGT8_CATRO |
| Csinscaffold000230080490.1 | Terpenoid | UGT | medium | pass | UGT__00032__sp_F8WKW1_UGT2_GARJA |
| Csinscaffold000260084850.1 | Terpenoid | UGT | medium | pass | UGT__00116__sp_U3UA11_UGT7_CATRO |
| Csinscaffold000260084860.1 | Terpenoid | UGT | medium | pass | UGT__00116__sp_U3UA11_UGT7_CATRO |
| Csinscaffold000260084870.1 | Terpenoid | UGT | medium | pass | UGT__00116__sp_U3UA11_UGT7_CATRO |
| Csinscaffold000260085100.1 | Terpenoid | UGT | medium | pass | UGT__00039__sp_K4D3V7_U76E1_SOLLC |
| Csinscaffold000260086290.1 | Terpenoid | UGT | low | borderline | UGT__00034__sp_F8WLS6_UGT6_CATRO |
| Csinscaffold000260086300.1 | Terpenoid | UGT | medium | pass | UGT__00105__sp_Q9SK82_U85A1_ARATH |
| Csinscaffold000280087780.1 | Terpenoid | UGT | medium | pass | UGT__00109__sp_Q9ZQ94_U73C5_ARATH |
| Csinscaffold000280087790.1 | Terpenoid | UGT | medium | pass | UGT__00109__sp_Q9ZQ94_U73C5_ARATH |
| Csinscaffold000300090680.1 | Terpenoid | UGT | medium | pass | UGT__00082__sp_Q9C9B0_U89B1_ARATH |
| Csinscaffold000330094570.1 | Terpenoid | UGT | low | borderline | UGT__00055__sp_O48676_U74B1_ARATH |
| Csinscaffold000330094580.1 | Terpenoid | UGT | medium | pass | UGT__00075__sp_Q7Y232_U73B4_ARATH |
| Csinscaffold000330094590.1 | Terpenoid | UGT | low | borderline | UGT__00078__sp_Q8W491_U73B3_ARATH |
| Csinscaffold000330094600.1 | Terpenoid | UGT | medium | pass | UGT__00078__sp_Q8W491_U73B3_ARATH |
| Csinscaffold000330094610.1 | Terpenoid | UGT | medium | pass | UGT__00075__sp_Q7Y232_U73B4_ARATH |
| Csinscaffold000330094620.1 | Terpenoid | UGT | medium | pass | UGT__00075__sp_Q7Y232_U73B4_ARATH |
| Csinscaffold000330094630.1 | Terpenoid | UGT | medium | pass | UGT__00078__sp_Q8W491_U73B3_ARATH |
| Csinscaffold000330094640.1 | Terpenoid | UGT | medium | pass | UGT__00078__sp_Q8W491_U73B3_ARATH |
| Csinscaffold000360097720.1 | Terpenoid | UGT | medium | pass | UGT__00034__sp_F8WLS6_UGT6_CATRO |