PlantSME Plant secondary metabolism enzyme database

Citrus sinensis (citrus_sinensis)

Imported from atlas release summary for Citrus sinensis.

2333
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.22% Alkaloid pathway 23.53% Phenylpropanoid pathway 20.06% Flavonoid pathway 9.94% Rosmarinic acid pathway 8.19% Steroid pathway 8.06%
Family Distribution
BAHD 6.2% 4CL 5.65% C4H 5.65% C3'H/CYP98A 4.96% NMT 3.77% POD 3.66% CYP76 3.64% UGT 3.47%
Other Families 62.99%
More Families (97)
IFS 178 3.16% 7DLGT 161 2.86% UFGT 154 2.74% T3O 152 2.7% F3H 148 2.63% STR 122 2.17% CAS 111 1.97% F3'H/CYP75B 108 1.92% CODM/T6ODM 105 1.87% DWF4/CYP90B1 94 1.67% BR6OX2/CYP85A2 92 1.64% IFR 88 1.56% CAD 87 1.55% CYP71 85 1.51% TPS 82 1.46% SMT1/SMT2/SMT3 73 1.3% COMT 72 1.28% GES 71 1.26% SGD 61 1.08% G8O/G8H 61 1.08% H6H 60 1.07% TRI/TRII 59 1.05% GS 54 0.96% CYP90D1 52 0.92% T16H 47 0.84% TAT 45 0.8% 8HGO 43 0.76% BBE 41 0.73% LAC 39 0.69% ANR 38 0.68% 16OMT 37 0.66% CSE 36 0.64% PYKS 34 0.6% CCR 34 0.6% IO 32 0.57% HCT 32 0.57% SLS 30 0.53% FNS 29 0.52% AACT 29 0.52% F5H/CYP84A 28 0.5% RAS 28 0.5% CPD/CYP90A1 27 0.48% GGPPS 27 0.48% CCoAOMT 26 0.46% CPR 26 0.46% DFR 25 0.44% PMT 24 0.43% COR 24 0.43% LAMT 24 0.43% CNMT 23 0.41% 7DLH 23 0.41% NCS 21 0.37% F3'5'H/CYP75A 21 0.37% MPO 16 0.28% ISY 16 0.28% ANS/LDOX 15 0.27% PAL 15 0.27% CYP51G1 15 0.27% SQS/FDFT1 14 0.25% MCT/IspD 14 0.25% TYDC_DDC 12 0.21% MVD 12 0.21% DXS 11 0.2% CYP719 10 0.18% CHS 10 0.18% HMGS 10 0.18% BR6OX1/CYP85A1 9 0.16% HDS/IspG 9 0.16% HDR/IspH 9 0.16% HPPR 8 0.14% ROT3/CYP90C1 8 0.14% FPPS 8 0.14% CYP80B1 7 0.12% 6OMT_4OMT_SOMT 7 0.12% DXR 7 0.12% XMT_MXMT_DXMT 6 0.11% CHI 6 0.11% SQE 6 0.11% IDI 6 0.11% ODC 5 0.09% DWF7 5 0.09% MVK 5 0.09% HYD1 4 0.07% HMGR 4 0.07% TDC 3 0.05% ADC 3 0.05% FLS 3 0.05% SMO1/SMO2 3 0.05% DWF1 3 0.05% CPI1 3 0.05% DWF5 3 0.05% MDS/IspF 3 0.05% DET2 2 0.04% CMK/IspE 2 0.04% FK 1 0.02% GPPS 1 0.02% PMK 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 705 19 BAHD (287) View species results
Alkaloid pathway 549 25 NMT (96) View species results
Phenylpropanoid pathway 468 13 POD (203) View species results
Flavonoid pathway 232 15 UFGT (132) View species results
Rosmarinic acid pathway 191 7 C4H (66) View species results
Steroid pathway 188 14 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1881 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 409 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
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Gene Pathway Family Confidence Status
Csinscaffold000020011160.1 Alkaloid TYDC_DDC medium borderline
Csinscaffold000100047690.1 Alkaloid TYDC_DDC medium borderline
Csinscaffold000540112380.1 Alkaloid TYDC_DDC medium borderline
Csinscaffold000590116150.1 Alkaloid TYDC_DDC low borderline
Csinscaffold000590116150.2 Alkaloid TYDC_DDC low borderline
Csinscaffold000600116510.1 Alkaloid TYDC_DDC medium borderline
Csinscaffold000990137430.1 Alkaloid TYDC_DDC medium borderline
Csinscaffold001080141270.1 Alkaloid TYDC_DDC medium borderline
Csinscaffold005280201310.1 Alkaloid TYDC_DDC medium borderline
Csinscaffold011650218520.1 Alkaloid TYDC_DDC medium borderline
Csinscaffold034850232880.1 Alkaloid TYDC_DDC medium borderline
Csinscaffold036780233570.1 Alkaloid TYDC_DDC medium borderline