PlantSME Plant secondary metabolism enzyme database

Citrus sinensis (citrus_sinensis)

Imported from atlas release summary for Citrus sinensis.

2333
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 705 19 BAHD (287) View species results
Alkaloid pathway 549 25 NMT (96) View species results
Phenylpropanoid pathway 468 13 POD (203) View species results
Flavonoid pathway 232 15 UFGT (132) View species results
Rosmarinic acid pathway 191 7 C4H (66) View species results
Steroid pathway 188 14 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1881 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 409 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CCR
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Gene Pathway Family Confidence Status
Csinscaffold000010001730.1 Phenylpropanoid CCR medium borderline
Csinscaffold000020015970.1 Phenylpropanoid CCR low borderline
Csinscaffold000110052780.1 Phenylpropanoid CCR low borderline
Csinscaffold000130056320.1 Phenylpropanoid CCR low borderline
Csinscaffold000190070850.1 Phenylpropanoid CCR medium borderline
Csinscaffold000230081190.1 Phenylpropanoid CCR medium pass
Csinscaffold000260086160.1 Phenylpropanoid CCR medium borderline
Csinscaffold000260086160.2 Phenylpropanoid CCR medium borderline
Csinscaffold000520110910.1 Phenylpropanoid CCR low borderline
Csinscaffold001340149500.1 Phenylpropanoid CCR medium borderline
Csinscaffold001340149500.2 Phenylpropanoid CCR medium borderline
Csinscaffold001340149500.3 Phenylpropanoid CCR medium borderline
Csinscaffold001850161380.1 Phenylpropanoid CCR low borderline
Csinscaffold002200167710.1 Phenylpropanoid CCR medium pass
Csinscaffold002690175670.1 Phenylpropanoid CCR medium borderline
Csinscaffold002690175690.1 Phenylpropanoid CCR medium borderline
Csinscaffold002690175690.2 Phenylpropanoid CCR medium borderline
Csinscaffold002690175690.3 Phenylpropanoid CCR medium borderline
Csinscaffold002690175690.4 Phenylpropanoid CCR medium borderline
Csinscaffold002690175700.1 Phenylpropanoid CCR medium borderline
Csinscaffold002690175700.2 Phenylpropanoid CCR medium borderline
Csinscaffold002880178780.1 Phenylpropanoid CCR medium pass
Csinscaffold004030192520.1 Phenylpropanoid CCR low borderline
Csinscaffold004030192520.2 Phenylpropanoid CCR low borderline
Csinscaffold004030192520.3 Phenylpropanoid CCR low borderline
Csinscaffold004030192520.4 Phenylpropanoid CCR low borderline
Csinscaffold007330210090.1 Phenylpropanoid CCR medium borderline
Csinscaffold009850215630.1 Phenylpropanoid CCR medium borderline
Csinscaffold009850215630.2 Phenylpropanoid CCR medium borderline
Csinscaffold009850215630.3 Phenylpropanoid CCR medium borderline
Csinscaffold009850215630.4 Phenylpropanoid CCR medium borderline
Csinscaffold014380221550.1 Phenylpropanoid CCR medium borderline
Csinscaffold014380221550.2 Phenylpropanoid CCR medium borderline
Csinscaffold100330248930.1 Phenylpropanoid CCR medium pass