PlantSME Plant secondary metabolism enzyme database

Citrus sinensis (citrus_sinensis)

Imported from atlas release summary for Citrus sinensis.

2333
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 705 19 BAHD (287) View species results
Alkaloid pathway 549 25 NMT (96) View species results
Phenylpropanoid pathway 468 13 POD (203) View species results
Flavonoid pathway 232 15 UFGT (132) View species results
Rosmarinic acid pathway 191 7 C4H (66) View species results
Steroid pathway 188 14 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1881 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 409 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CPD/CYP90A1
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Gene Pathway Family Confidence Status
Csinscaffold000020011750.1 Steroid CPD/CYP90A1 medium borderline
Csinscaffold000030017870.1 Steroid CPD/CYP90A1 low borderline
Csinscaffold000050031080.1 Steroid CPD/CYP90A1 low borderline
Csinscaffold000050031650.1 Steroid CPD/CYP90A1 medium borderline
Csinscaffold000100048130.1 Steroid CPD/CYP90A1 medium borderline
Csinscaffold000170066220.1 Steroid CPD/CYP90A1 medium borderline
Csinscaffold000170066810.2 Steroid CPD/CYP90A1 medium borderline
Csinscaffold000210075630.6 Steroid CPD/CYP90A1 medium borderline
Csinscaffold000400100530.1 Steroid CPD/CYP90A1 low borderline
Csinscaffold000400100530.2 Steroid CPD/CYP90A1 low borderline
Csinscaffold000400100530.3 Steroid CPD/CYP90A1 low borderline
Csinscaffold000400100530.4 Steroid CPD/CYP90A1 low borderline
Csinscaffold000460104740.1 Steroid CPD/CYP90A1 medium borderline
Csinscaffold001190144740.3 Steroid CPD/CYP90A1 low borderline
Csinscaffold001190144740.5 Steroid CPD/CYP90A1 low borderline
Csinscaffold001250147080.1 Steroid CPD/CYP90A1 low borderline
Csinscaffold001250147080.2 Steroid CPD/CYP90A1 low borderline
Csinscaffold001250147080.3 Steroid CPD/CYP90A1 low borderline
Csinscaffold001250147080.5 Steroid CPD/CYP90A1 low borderline
Csinscaffold001580155270.1 Steroid CPD/CYP90A1 low borderline
Csinscaffold003620188270.1 Steroid CPD/CYP90A1 low borderline
Csinscaffold004080193210.1 Steroid CPD/CYP90A1 low borderline
Csinscaffold005570202920.1 Steroid CPD/CYP90A1 medium borderline
Csinscaffold006300206500.5 Steroid CPD/CYP90A1 medium borderline
Csinscaffold006370206810.1 Steroid CPD/CYP90A1 low borderline
Csinscaffold066810241520.1 Steroid CPD/CYP90A1 low borderline
Csinscaffold084460245380.1 Steroid CPD/CYP90A1 low borderline