PlantSME Plant secondary metabolism enzyme database

Citrus sinensis (citrus_sinensis)

Imported from atlas release summary for Citrus sinensis.

2333
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 705 19 BAHD (287) View species results
Alkaloid pathway 549 25 NMT (96) View species results
Phenylpropanoid pathway 468 13 POD (203) View species results
Flavonoid pathway 232 15 UFGT (132) View species results
Rosmarinic acid pathway 191 7 C4H (66) View species results
Steroid pathway 188 14 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1881 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 409 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
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Gene Pathway Family Confidence Status
Csinscaffold000010004800.1 Alkaloid IO medium borderline
Csinscaffold000020012420.1 Alkaloid IO low borderline
Csinscaffold000030016340.1 Alkaloid IO medium borderline
Csinscaffold000030016930.1 Alkaloid IO medium borderline
Csinscaffold000060035560.1 Alkaloid IO low borderline
Csinscaffold000210075630.3 Alkaloid IO low borderline
Csinscaffold000210075630.4 Alkaloid IO low borderline
Csinscaffold000220077170.1 Alkaloid IO low borderline
Csinscaffold000320093810.5 Alkaloid IO low borderline
Csinscaffold000330094420.1 Alkaloid IO medium borderline
Csinscaffold000560113520.1 Alkaloid IO medium borderline
Csinscaffold000560113540.1 Alkaloid IO medium borderline
Csinscaffold000560113550.1 Alkaloid IO medium borderline
Csinscaffold000810128790.1 Alkaloid IO medium borderline
Csinscaffold000920134040.1 Alkaloid IO medium borderline
Csinscaffold001050140250.1 Alkaloid IO medium borderline
Csinscaffold001130142800.1 Alkaloid IO medium borderline
Csinscaffold001130142810.1 Alkaloid IO medium borderline
Csinscaffold001840161100.1 Alkaloid IO low borderline
Csinscaffold003120181880.1 Alkaloid IO medium borderline
Csinscaffold003550187210.1 Alkaloid IO medium borderline
Csinscaffold005470202520.1 Alkaloid IO medium borderline
Csinscaffold006370206770.1 Alkaloid IO medium borderline
Csinscaffold006370206780.1 Alkaloid IO low borderline
Csinscaffold006370206790.1 Alkaloid IO low borderline
Csinscaffold007960211860.2 Alkaloid IO low borderline
Csinscaffold008510213040.1 Alkaloid IO medium borderline
Csinscaffold009070214230.1 Alkaloid IO medium borderline
Csinscaffold021220226540.1 Alkaloid IO medium borderline
Csinscaffold052710238080.1 Alkaloid IO medium pass
Csinscaffold066810241520.1 Alkaloid IO medium borderline
Csinscaffold119870252800.1 Alkaloid IO medium borderline