PlantSME Plant secondary metabolism enzyme database

Citrus sinensis (citrus_sinensis)

Imported from atlas release summary for Citrus sinensis.

2333
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 705 19 BAHD (287) View species results
Alkaloid pathway 549 25 NMT (96) View species results
Phenylpropanoid pathway 468 13 POD (203) View species results
Flavonoid pathway 232 15 UFGT (132) View species results
Rosmarinic acid pathway 191 7 C4H (66) View species results
Steroid pathway 188 14 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1881 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 409 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: HCT
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Gene Pathway Family Confidence Status
Csinscaffold000010005820.1 Phenylpropanoid HCT low borderline
Csinscaffold000020013430.1 Phenylpropanoid HCT low borderline
Csinscaffold000030017530.1 Phenylpropanoid HCT low borderline
Csinscaffold000050032050.1 Phenylpropanoid HCT low borderline
Csinscaffold000170066130.3 Phenylpropanoid HCT low borderline
Csinscaffold000210075330.1 Phenylpropanoid HCT low borderline
Csinscaffold000210075970.1 Phenylpropanoid HCT low borderline
Csinscaffold000380098960.1 Phenylpropanoid HCT medium pass
Csinscaffold000500108300.1 Phenylpropanoid HCT medium pass
Csinscaffold000540112420.1 Phenylpropanoid HCT low borderline
Csinscaffold000580115060.1 Phenylpropanoid HCT low borderline
Csinscaffold000580115350.1 Phenylpropanoid HCT low borderline
Csinscaffold000770126890.1 Phenylpropanoid HCT medium pass
Csinscaffold000970136520.1 Phenylpropanoid HCT low borderline
Csinscaffold000970136550.1 Phenylpropanoid HCT low borderline
Csinscaffold001130142880.1 Phenylpropanoid HCT medium pass
Csinscaffold001200145310.1 Phenylpropanoid HCT medium pass
Csinscaffold001380150410.1 Phenylpropanoid HCT low borderline
Csinscaffold001450152310.1 Phenylpropanoid HCT low borderline
Csinscaffold001590155530.1 Phenylpropanoid HCT low borderline
Csinscaffold002620174510.1 Phenylpropanoid HCT low borderline
Csinscaffold002840178040.1 Phenylpropanoid HCT medium pass
Csinscaffold003380185190.1 Phenylpropanoid HCT low borderline
Csinscaffold003930191320.1 Phenylpropanoid HCT medium pass
Csinscaffold004080193260.1 Phenylpropanoid HCT medium pass
Csinscaffold004080193270.1 Phenylpropanoid HCT low borderline
Csinscaffold006440207150.1 Phenylpropanoid HCT low borderline
Csinscaffold007940211740.1 Phenylpropanoid HCT low borderline
Csinscaffold018490224630.1 Phenylpropanoid HCT medium pass
Csinscaffold076080243690.1 Phenylpropanoid HCT low borderline
Csinscaffold113260251550.1 Phenylpropanoid HCT medium pass
Csinscaffold114130251770.1 Phenylpropanoid HCT medium pass