PlantSME Plant secondary metabolism enzyme database

Citrus sinensis (citrus_sinensis)

Imported from atlas release summary for Citrus sinensis.

2333
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 705 19 BAHD (287) View species results
Alkaloid pathway 549 25 NMT (96) View species results
Phenylpropanoid pathway 468 13 POD (203) View species results
Flavonoid pathway 232 15 UFGT (132) View species results
Rosmarinic acid pathway 191 7 C4H (66) View species results
Steroid pathway 188 14 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1881 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 409 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T16H
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Gene Pathway Family Confidence Status
Csinscaffold000010002040.5 Alkaloid T16H low borderline
Csinscaffold000020011750.1 Alkaloid T16H medium borderline
Csinscaffold000030017930.1 Alkaloid T16H low borderline
Csinscaffold000060033630.1 Alkaloid T16H medium borderline
Csinscaffold000060034800.1 Alkaloid T16H medium borderline
Csinscaffold000170066810.2 Alkaloid T16H low borderline
Csinscaffold000200073230.1 Alkaloid T16H medium borderline
Csinscaffold000200073260.1 Alkaloid T16H medium borderline
Csinscaffold000200073280.1 Alkaloid T16H medium borderline
Csinscaffold000260086430.1 Alkaloid T16H medium borderline
Csinscaffold000320092890.1 Alkaloid T16H medium borderline
Csinscaffold000330094030.1 Alkaloid T16H medium borderline
Csinscaffold000340095070.1 Alkaloid T16H medium borderline
Csinscaffold000360097950.2 Alkaloid T16H low borderline
Csinscaffold000360097950.3 Alkaloid T16H low borderline
Csinscaffold000490108150.1 Alkaloid T16H medium borderline
Csinscaffold000500109100.1 Alkaloid T16H medium borderline
Csinscaffold000900132990.1 Alkaloid T16H medium borderline
Csinscaffold000900133000.1 Alkaloid T16H medium borderline
Csinscaffold000900133010.1 Alkaloid T16H medium borderline
Csinscaffold000930134540.1 Alkaloid T16H medium borderline
Csinscaffold000930134560.1 Alkaloid T16H low borderline
Csinscaffold001200144980.1 Alkaloid T16H medium borderline
Csinscaffold003890191180.1 Alkaloid T16H medium borderline
Csinscaffold004040192580.1 Alkaloid T16H medium borderline
Csinscaffold004150193860.1 Alkaloid T16H medium borderline
Csinscaffold004170193920.2 Alkaloid T16H low borderline
Csinscaffold004420195950.1 Alkaloid T16H medium pass
Csinscaffold005470202500.1 Alkaloid T16H medium borderline
Csinscaffold005850204270.1 Alkaloid T16H medium borderline
Csinscaffold006300206500.3 Alkaloid T16H low borderline
Csinscaffold006370206800.1 Alkaloid T16H medium borderline
Csinscaffold007960211850.1 Alkaloid T16H medium borderline
Csinscaffold007960211860.1 Alkaloid T16H medium borderline
Csinscaffold009070214250.1 Alkaloid T16H medium borderline
Csinscaffold010670217200.1 Alkaloid T16H medium borderline
Csinscaffold010870217500.1 Alkaloid T16H medium borderline
Csinscaffold012430219440.1 Alkaloid T16H medium borderline
Csinscaffold013910221070.1 Alkaloid T16H medium pass
Csinscaffold014590221720.1 Alkaloid T16H medium borderline
Csinscaffold014590221730.1 Alkaloid T16H medium borderline
Csinscaffold015070222170.1 Alkaloid T16H medium borderline
Csinscaffold018030224230.1 Alkaloid T16H medium borderline
Csinscaffold019960225780.1 Alkaloid T16H medium pass
Csinscaffold021220226530.1 Alkaloid T16H low borderline
Csinscaffold031590231440.1 Alkaloid T16H medium borderline
Csinscaffold063940240810.1 Alkaloid T16H medium borderline