Citrus sinensis (citrus_sinensis)
Imported from atlas release summary for Citrus sinensis.
2333
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2333
Candidate Genes
BAHD
6.2%
4CL
5.65%
C4H
5.65%
C3'H/CYP98A
4.96%
NMT
3.77%
POD
3.66%
CYP76
3.64%
UGT
3.47%
Other Families
62.99%
More Families (97)
IFS
178
3.16%
7DLGT
161
2.86%
UFGT
154
2.74%
T3O
152
2.7%
F3H
148
2.63%
STR
122
2.17%
CAS
111
1.97%
F3'H/CYP75B
108
1.92%
CODM/T6ODM
105
1.87%
DWF4/CYP90B1
94
1.67%
BR6OX2/CYP85A2
92
1.64%
IFR
88
1.56%
CAD
87
1.55%
CYP71
85
1.51%
TPS
82
1.46%
SMT1/SMT2/SMT3
73
1.3%
COMT
72
1.28%
GES
71
1.26%
SGD
61
1.08%
G8O/G8H
61
1.08%
H6H
60
1.07%
TRI/TRII
59
1.05%
GS
54
0.96%
CYP90D1
52
0.92%
T16H
47
0.84%
TAT
45
0.8%
8HGO
43
0.76%
BBE
41
0.73%
LAC
39
0.69%
ANR
38
0.68%
16OMT
37
0.66%
CSE
36
0.64%
PYKS
34
0.6%
CCR
34
0.6%
IO
32
0.57%
HCT
32
0.57%
SLS
30
0.53%
FNS
29
0.52%
AACT
29
0.52%
F5H/CYP84A
28
0.5%
RAS
28
0.5%
CPD/CYP90A1
27
0.48%
GGPPS
27
0.48%
CCoAOMT
26
0.46%
CPR
26
0.46%
DFR
25
0.44%
PMT
24
0.43%
COR
24
0.43%
LAMT
24
0.43%
CNMT
23
0.41%
7DLH
23
0.41%
NCS
21
0.37%
F3'5'H/CYP75A
21
0.37%
MPO
16
0.28%
ISY
16
0.28%
ANS/LDOX
15
0.27%
PAL
15
0.27%
CYP51G1
15
0.27%
SQS/FDFT1
14
0.25%
MCT/IspD
14
0.25%
TYDC_DDC
12
0.21%
MVD
12
0.21%
DXS
11
0.2%
CYP719
10
0.18%
CHS
10
0.18%
HMGS
10
0.18%
BR6OX1/CYP85A1
9
0.16%
HDS/IspG
9
0.16%
HDR/IspH
9
0.16%
HPPR
8
0.14%
ROT3/CYP90C1
8
0.14%
FPPS
8
0.14%
CYP80B1
7
0.12%
6OMT_4OMT_SOMT
7
0.12%
DXR
7
0.12%
XMT_MXMT_DXMT
6
0.11%
CHI
6
0.11%
SQE
6
0.11%
IDI
6
0.11%
ODC
5
0.09%
DWF7
5
0.09%
MVK
5
0.09%
HYD1
4
0.07%
HMGR
4
0.07%
TDC
3
0.05%
ADC
3
0.05%
FLS
3
0.05%
SMO1/SMO2
3
0.05%
DWF1
3
0.05%
CPI1
3
0.05%
DWF5
3
0.05%
MDS/IspF
3
0.05%
DET2
2
0.04%
CMK/IspE
2
0.04%
FK
1
0.02%
GPPS
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 705 | 19 | BAHD (287) | View species results |
| Alkaloid pathway | 549 | 25 | NMT (96) | View species results |
| Phenylpropanoid pathway | 468 | 13 | POD (203) | View species results |
| Flavonoid pathway | 232 | 15 | UFGT (132) | View species results |
| Rosmarinic acid pathway | 191 | 7 | C4H (66) | View species results |
| Steroid pathway | 188 | 14 | CAS (104) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1881 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 409 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GES
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Csinscaffold000020009910.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Csinscaffold000020009920.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Csinscaffold000040027060.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Csinscaffold000070038110.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| Csinscaffold000070038110.2 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| Csinscaffold000100048790.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| Csinscaffold000100048820.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Csinscaffold000100048830.1 | Alkaloid | GES | medium | pass | GES__00001__sp_A0A7G5KLV3_TPS4_CANOD |
| Csinscaffold000100048840.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| Csinscaffold000100049630.1 | Alkaloid | GES | medium | pass | GES__00010__sp_Q93YV0_GES_ARATH |
| Csinscaffold000120054810.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Csinscaffold000120054850.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Csinscaffold000120054860.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Csinscaffold000200073290.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Csinscaffold000220078240.1 | Alkaloid | GES | low | borderline | GES__00011__sp_R9QMR5_ATERP_PINBN |
| Csinscaffold000270086660.1 | Alkaloid | GES | medium | pass | GES__00001__sp_A0A7G5KLV3_TPS4_CANOD |
| Csinscaffold000440104060.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Csinscaffold000440104060.2 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Csinscaffold000440104060.3 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Csinscaffold000520110950.1 | Alkaloid | GES | medium | pass | GES__00008__sp_Q84ZW8_ACSS_MAIZE |
| Csinscaffold000640119830.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| Csinscaffold000850130760.1 | Alkaloid | GES | medium | pass | GES__00007__sp_Q6USK1_GERS_OCIBA |
| Csinscaffold000850130770.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| Csinscaffold001010138200.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Csinscaffold001010138210.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Csinscaffold001010138460.1 | Alkaloid | GES | medium | pass | GES__00006__sp_Q4JHG3_GRNLC_PERFH |
| Csinscaffold001620156110.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Csinscaffold001690158100.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| Csinscaffold002280169130.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Csinscaffold002930179350.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| Csinscaffold002930179390.1 | Alkaloid | GES | medium | pass | GES__00001__sp_A0A7G5KLV3_TPS4_CANOD |
| Csinscaffold003420185530.1 | Alkaloid | GES | medium | pass | GES__00001__sp_A0A7G5KLV3_TPS4_CANOD |
| Csinscaffold003420185540.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Csinscaffold003420185640.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Csinscaffold003480186330.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| Csinscaffold003480186350.1 | Alkaloid | GES | medium | pass | GES__00006__sp_Q4JHG3_GRNLC_PERFH |
| Csinscaffold003690189270.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Csinscaffold003690189280.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Csinscaffold003690189290.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Csinscaffold003690189300.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| Csinscaffold003690189310.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Csinscaffold003690189320.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| Csinscaffold003710189420.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| Csinscaffold003790190450.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| Csinscaffold004020192260.1 | Alkaloid | GES | medium | pass | GES__00005__sp_Q308N0_GRNL6_PERFR |
| Csinscaffold004020192270.1 | Alkaloid | GES | medium | pass | GES__00002__sp_C0KWV4_GRNLG_PERFH |
| Csinscaffold004770198230.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| Csinscaffold004770198240.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| Csinscaffold005670203720.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| Csinscaffold005670203730.1 | Alkaloid | GES | medium | pass | GES__00006__sp_Q4JHG3_GRNLC_PERFH |