PlantSME Plant secondary metabolism enzyme database

Citrus sinensis (citrus_sinensis)

Imported from atlas release summary for Citrus sinensis.

2333
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 705 19 BAHD (287) View species results
Alkaloid pathway 549 25 NMT (96) View species results
Phenylpropanoid pathway 468 13 POD (203) View species results
Flavonoid pathway 232 15 UFGT (132) View species results
Rosmarinic acid pathway 191 7 C4H (66) View species results
Steroid pathway 188 14 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1881 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 409 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CODM/T6ODM
Reset
Gene Pathway Family Confidence Status
Csinscaffold000010002160.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000010005160.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000010006200.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000020008810.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000040025630.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000040025630.2 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000070037560.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000070037570.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000070037580.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000070037580.2 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000070037580.3 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000070038300.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000070039150.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000070039150.4 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000100048480.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000100048480.2 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000100048480.3 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000130055630.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000130055630.2 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000160064960.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000190071850.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000210075480.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000210075930.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000210076220.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000210076230.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000260085930.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000270087040.4 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000270087040.5 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000270087040.6 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000270087050.2 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000280088600.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000280088600.2 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000400100150.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000430103710.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000430103720.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000430103730.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000430103750.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000430103770.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000520111270.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000520111280.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000530111480.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000530111480.2 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000530111480.3 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000530111480.5 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000550113220.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000580114860.1 Alkaloid CODM/T6ODM low borderline
Csinscaffold000580114890.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000620118890.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000800128540.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000800128550.1 Alkaloid CODM/T6ODM medium borderline