PlantSME Plant secondary metabolism enzyme database

Citrus sinensis (citrus_sinensis)

Imported from atlas release summary for Citrus sinensis.

2333
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 705 19 BAHD (287) View species results
Alkaloid pathway 549 25 NMT (96) View species results
Phenylpropanoid pathway 468 13 POD (203) View species results
Flavonoid pathway 232 15 UFGT (132) View species results
Rosmarinic acid pathway 191 7 C4H (66) View species results
Steroid pathway 188 14 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1881 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 409 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CODM/T6ODM
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Gene Pathway Family Confidence Status
Csinscaffold000840130710.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000860131070.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000920134200.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold000980136900.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold001260147460.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold001260147460.2 Alkaloid CODM/T6ODM medium borderline
Csinscaffold001260147460.3 Alkaloid CODM/T6ODM medium borderline
Csinscaffold001290148010.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold001300148530.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold001510153280.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold001520153580.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold001520153610.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold001670157620.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold001670157630.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold001670157650.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold001680157910.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold001680157920.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold001680157930.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold001790160230.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold001790160240.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold001790160250.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold001920162800.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold002170167240.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold002170167240.2 Alkaloid CODM/T6ODM medium borderline
Csinscaffold003050180780.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold003250183190.1 Alkaloid CODM/T6ODM low borderline
Csinscaffold003250183200.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold003560187490.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold003700189380.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold004390195740.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold004390195750.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold004390195770.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold004390195780.4 Alkaloid CODM/T6ODM medium borderline
Csinscaffold004390195800.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold005120200520.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold006720208180.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold006720208190.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold007390210290.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold007390210300.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold007390210310.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold007390210320.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold007390210330.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold007390210340.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold007390210350.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold016160222940.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold016160222950.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold020390226090.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold020390226100.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold020550226170.1 Alkaloid CODM/T6ODM medium borderline
Csinscaffold026020229030.1 Alkaloid CODM/T6ODM medium borderline