PlantSME Plant secondary metabolism enzyme database

Citrus sinensis (citrus_sinensis)

Imported from atlas release summary for Citrus sinensis.

2333
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 705 19 BAHD (287) View species results
Alkaloid pathway 549 25 NMT (96) View species results
Phenylpropanoid pathway 468 13 POD (203) View species results
Flavonoid pathway 232 15 UFGT (132) View species results
Rosmarinic acid pathway 191 7 C4H (66) View species results
Steroid pathway 188 14 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1881 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 409 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DWF4/CYP90B1
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Gene Pathway Family Confidence Status
Csinscaffold000010000440.1 Steroid DWF4/CYP90B1 medium borderline
Csinscaffold000010002030.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000010002040.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000010002040.2 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000010002040.3 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000010002040.5 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000010002040.6 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000010002040.7 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000010002040.8 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000020009900.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000020011220.1 Steroid DWF4/CYP90B1 medium borderline
Csinscaffold000020012810.1 Steroid DWF4/CYP90B1 medium borderline
Csinscaffold000040027560.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000040027600.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000060033610.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000060033620.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000060033630.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000060035560.1 Steroid DWF4/CYP90B1 medium borderline
Csinscaffold000070038160.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000090044110.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000130056040.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000150060720.1 Steroid DWF4/CYP90B1 medium borderline
Csinscaffold000190072200.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000190072200.2 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000190072200.3 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000190072370.1 Steroid DWF4/CYP90B1 medium borderline
Csinscaffold000200073230.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000200073300.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000210075630.5 Steroid DWF4/CYP90B1 medium borderline
Csinscaffold000240081620.2 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000260086430.1 Steroid DWF4/CYP90B1 medium borderline
Csinscaffold000310091880.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000330094030.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000330094340.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000330094450.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000360097950.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000360097950.2 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000360097950.3 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000400099780.1 Steroid DWF4/CYP90B1 medium borderline
Csinscaffold000430103070.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000430103300.1 Steroid DWF4/CYP90B1 medium borderline
Csinscaffold000430103370.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000490108150.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000490108180.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000560113520.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000560113550.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000710124290.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000770126930.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000770126950.1 Steroid DWF4/CYP90B1 low borderline
Csinscaffold000900133000.1 Steroid DWF4/CYP90B1 low borderline